Rmu_sc0002722.1_g000008

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002722.1
OG0000242
Physical Location & Seq
Reverse (-)
30899 .. 31210
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002722.1_g000008.1.cds

Sequence Viewer

Length: 312 bp
atgtcctgtaacaccaaggcatacctcactctcaacagctttgaggcaggtggtgacggaggaggcccatccgaatgtgacggcaagtatcacaatgacaacactctagttgttgcattatccaccggatggtacaatggtggatcaaggtgccttaacaacatcagaattaatggtaacgggcgtagcgtggtggccatggtcgtggatgagtgcgactctactgagggatgtgatgcgcagaccatgattatcagcctccttgtcccaacaacattgttgatgcctccaaggccgtctggaaagccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.83

Weight (kDa)

4.83

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
Acc16I TGCGCA 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 129
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 151
AoxI GGCC 3 cut(s) 64, 195, 293
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 150
BccI CCATC 2 cut(s) 76, 123
BceAI ACGGC 2 cut(s) 97, 280
BfaI CTAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 152
BmsI GCATC 2 cut(s) 226, 273
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BsaJI CCNNGG 3 cut(s) 15, 198, 290
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 15, 198, 290
BseGI GGATG 4 cut(s) 68, 134, 214, 236
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 75
BshFI GGCC 3 cut(s) 66, 197, 295
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 66, 197, 295
Bsp143I GATC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 198
BspANI GGCC 3 cut(s) 66, 197, 295
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 15, 198, 290
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 3 cut(s) 15, 198, 290
BstDEI CTNAG 2 cut(s) 225, 309
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 4 cut(s) 68, 134, 214, 236
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 3 cut(s) 66, 197, 295
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 68, 134, 214, 236
BveI ACCTGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 199, 247
CviJI RGCY 6 cut(s) 39, 66, 197, 258, 295, 307
CviKI_1 RGCY 6 cut(s) 39, 66, 197, 258, 295, 307
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 225, 309
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 15, 198, 290
EcoT14I CCWWGG 3 cut(s) 15, 198, 290
ErhI CCWWGG 3 cut(s) 15, 198, 290
FaeI CATG 2 cut(s) 202, 250
FaiI YATR 3 cut(s) 22, 200, 248
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 198, 246
FokI GGATG 4 cut(s) 55, 141, 221, 243
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 66, 197, 295
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 202, 250
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 73, 167
Hpy188III TCNNGA 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 225, 309
Hsp92II CATG 2 cut(s) 202, 250
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 143
LpnPI CCDG 4 cut(s) 19, 33, 139, 285
LweI GCATC 2 cut(s) 226, 273
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 4 cut(s) 8, 53, 77, 176
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 7 cut(s) 35, 37, 53, 56, 220, 269, 297
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 156, 171
MslI CAYNNNNRTG 2 cut(s) 73, 203
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 292
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 202, 250
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 53, 77
NsbI TGCGCA 1 cut(s) 240
PaqCI CACCTGC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 73, 203
SaqAI TTAA 2 cut(s) 156, 171
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 212
SetI ASST 4 cut(s) 27, 41, 52, 152
SfaNI GCATC 2 cut(s) 226, 273
SmiMI CAYNNNNRTG 2 cut(s) 73, 203
Sse9I AATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 3 cut(s) 15, 198, 290
TasI AATT 1 cut(s) 168
Tru1I TTAA 2 cut(s) 156, 171
Tru9I TTAA 2 cut(s) 156, 171
TseFI GTSAC 2 cut(s) 53, 77
Tsp45I GTSAC 2 cut(s) 53, 77
TspGWI ACGGA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 129
VspI ATTAAT 1 cut(s) 171
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.