pycom07g09590

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000242
Physical Location & Seq
Forward (+)
8861882 .. 8862433
552 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09590.1

Sequence Viewer

Length: 552 bp
ATGAAGAGCTCAACAATTTTCTCAATCGGTTTCCTTTTAACAATTTGCCTGGCCACTGAAGCTCAGCAGTGTCGTCCGAGCGGCCGGATTCGAGGCAAGAAGGCCCCTTCTGGACAATGCAACACGGAAAACGACTCTGACTGCTGTGTCAAAGGAAAAATGTACACAACCTACACCTGTTCGCCGCCCTTGTCCGGACACACCAAGGCCTATCTCACTCTCAACAGCTTTGAGGCAGGCGGCGATGGAGGCGGTCCATCGGAATGCGACAACAAATACCACAACGACAACACGCACGTTGTGGCGCTGTCTACTGGTTGGTACAACGGCGGAGGAAGGTGCCATAACAACATCACGATTAGTGCGAATGGACGGAGTGTGGTGGCGATGGTGGTGGATGAGTGTGACTCTACTATGGGATGTGATGCAGTGCATGACTACCAACCTCCATGCCCTAACAACATTGTTGATGCCTCAAAGGCGGTCTGGGAAGCCTTGGGTGTGCGGAAGGAGGACTGGGGTGGCCTCGATATCACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.57

Weight (kDa)

5.44

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 21 - 183 2.1e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 339
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 7 cut(s) 81, 185, 240, 252, 330, 482, 505
AcoI YGGCCR 2 cut(s) 51, 82
AcuI CTGAAG 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 2 cut(s) 164, 323
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 9, 62, 228
AluI AGCT 3 cut(s) 9, 62, 228
Alw21I GWGCWC 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 5 cut(s) 51, 82, 102, 207, 523
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 103, 254
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 3 cut(s) 239, 265, 382
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 3 cut(s) 82, 185, 241
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 83, 186, 242
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 103, 254
BmiI GGNNCC 2 cut(s) 105, 341
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 2 cut(s) 415, 460
BmuI ACTGGG 1 cut(s) 526
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu1102I GCTNAGC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 204, 495
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 319, 521
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 204, 495
BseGI GGATG 2 cut(s) 403, 425
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 319, 521
BseX3I CGGCCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 5 cut(s) 53, 84, 104, 209, 525
BshNI GGYRCC 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 2 cut(s) 85, 195
BslI CCNNNNNNNGG 1 cut(s) 194
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 5 cut(s) 53, 84, 104, 209, 525
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 194
Bsp1407I TGTACA 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 7 cut(s) 81, 185, 240, 252, 330, 482, 505
BspANI GGCC 5 cut(s) 53, 84, 104, 209, 525
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 105, 341
BspT107I GGYRCC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 319, 521
BssECI CCNNGG 2 cut(s) 204, 495
BssT1I CCWWGG 2 cut(s) 204, 495
Bst2UI CCWGG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 63, 549
BstF5I GGATG 2 cut(s) 403, 425
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 59, 249, 479
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 5 cut(s) 53, 84, 104, 209, 525
BtgZI GCGATG 2 cut(s) 258, 401
BtsCI GGATG 2 cut(s) 403, 425
BtsI GCAGTG 2 cut(s) 74, 435
BtsIMutI CAGTG 3 cut(s) 54, 74, 435
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 103, 254
Csp6I GTAC 2 cut(s) 163, 322
CviAII CATG 3 cut(s) 434, 450, 537
CviJI RGCY 9 cut(s) 9, 53, 62, 84, 104, 209, 228, 494, 525
CviKI_1 RGCY 9 cut(s) 9, 53, 62, 84, 104, 209, 228, 494, 525
CviQI GTAC 2 cut(s) 163, 322
DdeI CTNAG 2 cut(s) 63, 549
DraIII CACNNNGTG 1 cut(s) 301
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 2 cut(s) 51, 82
EagI CGGCCG 1 cut(s) 82
EciI GGCGGA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 204, 495
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 254
Eco52I CGGCCG 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 204, 495
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 204, 495
FaeI CATG 3 cut(s) 437, 453, 540
FaiI YATR 5 cut(s) 345, 416, 435, 451, 538
FatI CATG 3 cut(s) 433, 449, 536
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 82, 185, 241
FokI GGATG 2 cut(s) 410, 432
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 82, 185, 241
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 82, 185, 241
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 5 cut(s) 53, 84, 104, 209, 525
HapII CCGG 2 cut(s) 85, 195
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 437, 453, 540
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 3 cut(s) 88, 134, 407
HpaII CCGG 2 cut(s) 85, 195
Hpy166II GTNNAC 2 cut(s) 165, 312
Hpy188I TCNGA 4 cut(s) 78, 139, 262, 544
Hpy188III TCNNGA 3 cut(s) 111, 195, 355
Hpy8I GTNNAC 2 cut(s) 165, 312
HpyAV CCTTC 4 cut(s) 94, 117, 330, 502
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 120, 428, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 249, 479
HpyF3I CTNAG 2 cut(s) 63, 549
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 3 cut(s) 437, 453, 540
HspAI GCGC 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 194
LweI GCATC 2 cut(s) 415, 460
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 404
MbiI CCGCTC 1 cut(s) 81
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 15, 42
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 2 cut(s) 128, 401
MnlI CCTC 8 cut(s) 86, 226, 242, 326, 456, 484, 505, 536
Mox20I TGGCCA 1 cut(s) 53
MroI TCCGGA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 53
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 2 cut(s) 85, 195
MspR9I CCNGG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 59, 249, 479
NlaIII CATG 3 cut(s) 437, 453, 540
NlaIV GGNNCC 2 cut(s) 105, 341
NmuCI GTSAC 1 cut(s) 404
PceI AGGCCT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 83, 186, 242
PleI GAGTC 2 cut(s) 128, 401
PpsI GAGTC 2 cut(s) 128, 401
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 105, 341
PspPI GGNCC 2 cut(s) 103, 254
RsaI GTAC 2 cut(s) 164, 323
RsaNI GTAC 2 cut(s) 163, 322
RseI CAYNNNNRTG 1 cut(s) 262
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 3 cut(s) 82, 185, 241
Sau96I GGNCC 2 cut(s) 103, 254
SchI GAGTC 2 cut(s) 128, 401
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 11
SetI ASST 8 cut(s) 11, 64, 173, 179, 230, 300, 341, 448
SfaNI GCATC 2 cut(s) 415, 460
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 262
Sse9I AATT 2 cut(s) 15, 42
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 7 cut(s) 81, 185, 240, 252, 330, 482, 505
SstI GAGCTC 1 cut(s) 11
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 2 cut(s) 204, 495
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 91, 528
TasI AATT 2 cut(s) 15, 42
TatI WGTACW 1 cut(s) 162
TauI GCSGC 3 cut(s) 84, 187, 243
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 3 cut(s) 61, 74, 435
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 140, 388
TspRI CASTG 3 cut(s) 61, 74, 435
VpaK11BI GGWCC 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.