Prupe.2G165600_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Reverse (-)
21485843 .. 21486406
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G165600.1

Sequence Viewer

Length: 564 bp
ATGAAGAATCAAATTTTCTCAGGTGCTTTTCTCTCCATCTTAATCATTCTTGCTTCAAACTGGAGCATTGAAGCTCAAACATGCAAGCCTAGCGGCAAGATCAGGGGGACAAAGCCTCCTAAGGGACAATGCAACAAGGACAATCAGTCCGACTGCTGTGAAAAAGGCAAGTTTTACACCACTTACACGTGCTCGCCGCGGGTGTCTAAGCGTACAAAAGCAACCTTGACCATCAACAGCTTTCAGAAGGGTGGTGATGGCGGTGCTCCAAGTGAATGTGACAACAAATACCACTCGGATAGCACCCGTGTCGTGGCTTTGTCAACGGGGTGGTTCAACAAAAGGAGCCGGTGTTTAGACGACATTATCATCCATGGTAACGGAAGGAGTGTCAAAGCCAAGGTTGTTGATGAGTGTGACTCCACCGTGGGATGTGATGCTGATCATGATTACCAGCCTCCATGTCCTAACAATATTGTGGATGCATCCAAAGCTGTTTGGAAGGCCTTGGGAGTGCCAGAAAGTGACTGGGGTGAATTGGATATATTCTGGTCTGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.46

Weight (kDa)

8.0

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 199
AciI CCGC 4 cut(s) 93, 197, 199, 261
AcsI RAATTY 1 cut(s) 12
AcvI CACGTG 1 cut(s) 189
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 122, 313
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 3 cut(s) 57, 71, 337
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 3 cut(s) 74, 240, 494
AluI AGCT 3 cut(s) 74, 240, 494
Alw21I GWGCWC 2 cut(s) 194, 268
AoxI GGCC 1 cut(s) 504
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 266, 545
AxyI CCTNAGG 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 194, 268
BccI CCATC 3 cut(s) 44, 239, 251
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 94, 197
BlsI GCNGC 2 cut(s) 95, 198
BmeRI GACNNNNNGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 4 cut(s) 427, 472, 494, 547
BmuI ACTGGG 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 197, 373, 399, 426, 507
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 337, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 313
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 65, 533
Bse21I CCTNAGG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 5 cut(s) 197, 373, 399, 426, 507
BseGI GGATG 4 cut(s) 369, 437, 485, 487
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 122, 313
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 65, 533
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 194, 268
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 2 cut(s) 121, 138
BslI CCNNNNNNNGG 2 cut(s) 122, 313
BsmFI GGGAC 2 cut(s) 121, 138
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 194, 268
Bsp143I GATC 2 cut(s) 99, 442
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 4 cut(s) 93, 197, 199, 261
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 2 cut(s) 65, 533
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 5 cut(s) 197, 373, 399, 426, 507
BssMI GATC 2 cut(s) 99, 442
BssT1I CCWWGG 3 cut(s) 373, 399, 507
Bst4CI ACNGT 1 cut(s) 427
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 86, 194
BstDEI CTNAG 3 cut(s) 19, 120, 207
BstDSI CCRYGG 3 cut(s) 197, 373, 426
BstF5I GGATG 4 cut(s) 369, 437, 485, 487
BstFNI CGCG 1 cut(s) 199
BstKTI GATC 2 cut(s) 102, 445
BstMBI GATC 2 cut(s) 99, 442
BstMWI GCNNNNNNNGC 2 cut(s) 90, 491
BstNSI RCATGY 1 cut(s) 84
BstUI CGCG 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 3 cut(s) 197, 373, 426
BtsCI GGATG 4 cut(s) 369, 437, 485, 487
Cac8I GCNNGC 2 cut(s) 86, 194
CciI TCATGA 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 348
Cfr42I CCGCGG 1 cut(s) 200
Csp6I GTAC 1 cut(s) 213
CviAII CATG 4 cut(s) 81, 374, 446, 462
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 19, 120, 207
DpnI GATC 2 cut(s) 101, 444
DpnII GATC 2 cut(s) 99, 442
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
Eco130I CCWWGG 3 cut(s) 373, 399, 507
Eco147I AGGCCT 1 cut(s) 506
Eco72I CACGTG 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 120
EcoT14I CCWWGG 3 cut(s) 373, 399, 507
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 3 cut(s) 373, 399, 507
FaeI CATG 4 cut(s) 84, 377, 449, 465
FaiI YATR 5 cut(s) 82, 375, 447, 463, 545
FaqI GGGAC 2 cut(s) 121, 138
FatI CATG 4 cut(s) 80, 373, 445, 461
FauI CCCGC 1 cut(s) 192
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 94, 197
FokI GGATG 4 cut(s) 356, 444, 472, 494
Fsp4HI GCNGC 2 cut(s) 94, 197
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 94, 197
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 1 cut(s) 506
HapII CCGG 1 cut(s) 349
Hin1II CATG 4 cut(s) 84, 377, 449, 465
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 7, 419
HpaII CCGG 1 cut(s) 349
HphI GGTGA 2 cut(s) 266, 545
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 4 cut(s) 151, 246, 298, 556
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 1 cut(s) 324
HpyAV CCTTC 3 cut(s) 241, 378, 496
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 84, 132, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 491
HpyF3I CTNAG 3 cut(s) 19, 120, 207
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 4 cut(s) 84, 377, 449, 465
Ksp22I TGATCA 1 cut(s) 442
KspI CCGCGG 1 cut(s) 200
Kzo9I GATC 2 cut(s) 99, 442
LmnI GCTCC 3 cut(s) 63, 271, 345
LpnPI CCDG 8 cut(s) 6, 46, 88, 362, 467, 514, 531, 535
LweI GCATC 4 cut(s) 427, 472, 494, 547
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 4 cut(s) 278, 377, 416, 524
MalI GATC 2 cut(s) 101, 444
MboI GATC 2 cut(s) 99, 442
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 194, 268
MluCI AATT 2 cut(s) 12, 536
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 126, 468
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 90, 491
NcoI CCATGG 1 cut(s) 373
NdeII GATC 2 cut(s) 99, 442
NlaIII CATG 4 cut(s) 84, 377, 449, 465
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 3 cut(s) 278, 416, 524
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 84
PagI TCATGA 1 cut(s) 445
PceI AGGCCT 1 cut(s) 506
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 95, 198
PleI GAGTC 1 cut(s) 413
PmaCI CACGTG 1 cut(s) 189
PmlI CACGTG 1 cut(s) 189
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 189
PspCI CACGTG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 347
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SacII CCGCGG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 94, 197
Sau3AI GATC 2 cut(s) 99, 442
SchI GAGTC 1 cut(s) 413
SduI GDGCHC 2 cut(s) 194, 268
SetI ASST 7 cut(s) 25, 76, 191, 227, 242, 405, 496
SfaNI GCATC 4 cut(s) 427, 472, 494, 547
Sfr303I CCGCGG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 200
Sse9I AATT 2 cut(s) 12, 536
SseBI AGGCCT 1 cut(s) 506
SsiI CCGC 4 cut(s) 93, 197, 199, 261
SspI AATATT 1 cut(s) 475
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 506
StyI CCWWGG 3 cut(s) 373, 399, 507
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 191
TasI AATT 2 cut(s) 12, 536
TauI GCSGC 2 cut(s) 96, 199
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 3 cut(s) 278, 416, 524
Tsp45I GTSAC 3 cut(s) 278, 416, 524
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 396
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.