Rh1AG134800

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000242
Physical Location & Seq
Forward (+)
25733568 .. 25733951
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG134800.1

Sequence Viewer

Length: 384 bp
ATGACTTGCTTCTTCTCAAAAGGGTCTATTCTAGTCATTCTCCTTTTAGCAATTTTCTTGGTTAGTGAAGCTCAGCAATGTCATCCAAGTGGAAGAATCAGAGGAAGGAAGCCCCCTCCTAGACAATGTAACAAGGAGGATGACTCTGACTGCTGTAAAGCTGGAAAAATGTACCCAACCTACACTTGCTCACCACCAATGTCCGGTAACACCCAGGCATGCCTCACTCTCAACAGCTTTGAGGCAGGTGGTGAAGGAGGAGGCTCATCCGAATGTGACGGCAAGTATCACAATGACAACACTCCAGTTGTTGCATTATCTACTGGATGGTACAACGGTGGATCAAGGTGCCTTAACAACATCAGAATTAATGGTAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.59

Weight (kDa)

8.08

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 17 - 124 6.2e-39 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AclWI GGATC 1 cut(s) 349
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 1 cut(s) 203
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 71, 161, 237
AluI AGCT 3 cut(s) 71, 161, 237
AlwI GGATC 1 cut(s) 349
AseI ATTAAT 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 183, 263
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BanI GGYRCC 1 cut(s) 348
BccI CCATC 1 cut(s) 321
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 2 cut(s) 32, 120
BfuAI ACCTGC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 305, 328
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 82, 145, 266, 332
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 305, 328
BseRI GAGGAG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 341
Bsp1720I GCTNAGC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 305, 328
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 82, 145, 266, 332
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 213
BtsCI GGATG 4 cut(s) 82, 145, 266, 332
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 1 cut(s) 219
CviJI RGCY 5 cut(s) 71, 112, 161, 237, 264
CviKI_1 RGCY 5 cut(s) 71, 112, 161, 237, 264
CviQI GTAC 2 cut(s) 172, 331
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 222
FaiI YATR 1 cut(s) 220
FatI CATG 1 cut(s) 218
FokI GGATG 4 cut(s) 69, 152, 253, 339
FspBI CTAG 2 cut(s) 32, 120
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 204
Hin1II CATG 1 cut(s) 222
HinfI GANTC 2 cut(s) 96, 143
HpaII CCGG 1 cut(s) 204
HphI GGTGA 2 cut(s) 183, 263
Hpy188I TCNGA 4 cut(s) 101, 148, 271, 365
HpyAV CCTTC 2 cut(s) 99, 248
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 341
LpnPI CCDG 7 cut(s) 147, 200, 217, 227, 231, 309, 318
MaeI CTAG 2 cut(s) 32, 120
MaeIII GTNAC 3 cut(s) 128, 206, 275
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 2 cut(s) 4, 105
MluCI AATT 2 cut(s) 51, 366
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 7 cut(s) 95, 126, 130, 233, 235, 251, 254
MseI TTAA 2 cut(s) 354, 369
MslI CAYNNNNRTG 2 cut(s) 87, 271
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
NdeII GATC 1 cut(s) 341
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 222
PaeI GCATGC 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 96
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 350
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 2 cut(s) 87, 271
SaqAI TTAA 2 cut(s) 354, 369
Sau3AI GATC 1 cut(s) 341
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 215
SetI ASST 6 cut(s) 73, 163, 182, 239, 250, 350
SmiMI CAYNNNNRTG 2 cut(s) 87, 271
SphI GCATGC 1 cut(s) 222
Sse9I AATT 2 cut(s) 51, 366
SspMI CTAG 2 cut(s) 32, 120
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 338
TasI AATT 2 cut(s) 51, 366
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 354, 369
Tru9I TTAA 2 cut(s) 354, 369
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 369
XceI RCATGY 1 cut(s) 222
XspI CTAG 2 cut(s) 32, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.