Rh1AG254300

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000242
Physical Location & Seq
Forward (+)
47038643 .. 47039373
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG254300.1

Sequence Viewer

Length: 561 bp
ATGAGGAGCTTCTTCTCTAAAGGGTCTATGATAGCCATTCTTCTTTTGGCATTTTGCTTGATTAGTGAAGCTCAGCAATGTCGTCCAAGCGGAAGGATTAGGGGAAGGAAGCCCCCTCCAGGACAATGTAACCAAGAAGACGACTCTGACTGTTGCAAAGCCGGAAAAATGTACCCGACATATACGTGCTCACCACCAACATCTGGCAACACTAAGGCATACCTCACTCTCAACAGCTTTGAGGCGGGTGGTGACGGGGGTGGCCCATCTGAATGTGATGGAAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCTACCGGATGGTACAATGGTGGATCAAGGTGCCTTAACAACATCAGAATTAACGGTAATGGGCACAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCAACTGAGGGATGTGATGCTGATCATGATTACCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCTAAGGCTGTCTGGAAAGCTTTAGGTGTGTCTAAAGACAACTGGGGTGGCTTAGATATTACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.88

Weight (kDa)

5.1

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 14 - 186 8.3e-68 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 2 cut(s) 90, 245
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 393
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 3 cut(s) 173, 287, 332
AfiI CCNNNNNNNGG 2 cut(s) 119, 203
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 9, 71, 237, 503
AluI AGCT 4 cut(s) 9, 71, 237, 503
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 1 cut(s) 349
AoxI GGCC 2 cut(s) 262, 393
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 183, 263
BaeGI GKGCMC 1 cut(s) 384
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 3 cut(s) 272, 274, 321
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 439
BglI GCCNNNNNGGC 1 cut(s) 488
BlpI GCTNAGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 424, 469
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 2 cut(s) 102, 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 203
Bse1I ACTGG 2 cut(s) 305, 530
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 3 cut(s) 332, 412, 434
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 119, 203
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 86, 414
BseNI ACTGG 2 cut(s) 305, 530
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 384
BshFI GGCC 2 cut(s) 264, 395
BshNI GGYRCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 162, 324
BslI CCNNNNNNNGG 2 cut(s) 119, 203
BsnI GGCC 2 cut(s) 264, 395
Bsp1286I GDGCHC 2 cut(s) 191, 384
Bsp143I GATC 2 cut(s) 341, 439
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 90, 245
BspANI GGCC 2 cut(s) 264, 395
BspCNI CTCAG 2 cut(s) 85, 415
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 305, 530
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 341, 439
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 152, 374
BstBAI YACGTR 1 cut(s) 186
BstDEI CTNAG 6 cut(s) 72, 213, 423, 486, 535, 558
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 332, 412, 434
BstKTI GATC 2 cut(s) 344, 442
BstMBI GATC 2 cut(s) 341, 439
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 2 cut(s) 264, 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 3 cut(s) 332, 412, 434
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 172, 286, 331
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 3 cut(s) 397, 443, 546
CviQI GTAC 3 cut(s) 172, 286, 331
DdeI CTNAG 6 cut(s) 72, 213, 423, 486, 535, 558
DpnI GATC 2 cut(s) 343, 441
DpnII GATC 2 cut(s) 341, 439
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 400, 446, 549
FaiI YATR 7 cut(s) 29, 181, 183, 220, 398, 444, 547
FatI CATG 3 cut(s) 396, 442, 545
FauI CCCGC 1 cut(s) 238
FbaI TGATCA 1 cut(s) 439
FokI GGATG 3 cut(s) 339, 419, 441
GsuI CTGGAG 2 cut(s) 102, 288
HaeIII GGCC 2 cut(s) 264, 395
HapII CCGG 2 cut(s) 162, 324
Hin1II CATG 3 cut(s) 400, 446, 549
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 2 cut(s) 143, 416
HpaII CCGG 2 cut(s) 162, 324
HphI GGTGA 2 cut(s) 183, 263
Hpy188I TCNGA 4 cut(s) 148, 271, 365, 553
Hpy188III TCNNGA 2 cut(s) 443, 496
HpyAV CCTTC 2 cut(s) 87, 99
HpyCH4III ACNGT 2 cut(s) 152, 374
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 6 cut(s) 72, 213, 423, 486, 535, 558
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 400, 446, 549
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 2 cut(s) 341, 439
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 9 cut(s) 105, 132, 175, 189, 318, 337, 464, 481, 511
LweI GCATC 2 cut(s) 424, 469
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 128, 251, 413
MalI GATC 2 cut(s) 343, 441
MboI GATC 2 cut(s) 341, 439
MboII GAAGA 3 cut(s) 4, 32, 149
MhlI GDGCHC 2 cut(s) 191, 384
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 137, 410
MnlI CCTC 6 cut(s) 126, 233, 235, 418, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 354, 369
MslI CAYNNNNRTG 3 cut(s) 184, 271, 401
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 2 cut(s) 162, 324
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 341, 439
NlaIII CATG 3 cut(s) 400, 446, 549
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 251, 413
PagI TCATGA 1 cut(s) 442
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 118
PleI GAGTC 2 cut(s) 137, 410
PpsI GAGTC 2 cut(s) 137, 410
Ppu21I YACGTR 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 3 cut(s) 173, 287, 332
RsaNI GTAC 3 cut(s) 172, 286, 331
RseI CAYNNNNRTG 3 cut(s) 184, 271, 401
SaqAI TTAA 2 cut(s) 354, 369
Sau3AI GATC 2 cut(s) 341, 439
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 137, 410
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 191, 384
SetI ASST 8 cut(s) 11, 73, 188, 225, 239, 350, 505, 511
SfaNI GCATC 2 cut(s) 424, 469
SmiMI CAYNNNNRTG 3 cut(s) 184, 271, 401
Sse9I AATT 1 cut(s) 366
SsiI CCGC 2 cut(s) 90, 245
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 152, 374
TaiI ACGT 1 cut(s) 188
TasI AATT 1 cut(s) 366
Tru1I TTAA 2 cut(s) 354, 369
Tru9I TTAA 2 cut(s) 354, 369
TseFI GTSAC 2 cut(s) 251, 413
Tsp45I GTSAC 2 cut(s) 251, 413
Van91I CCANNNNNTGG 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.