MD07G1139700.v1.1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000242
Physical Location & Seq
Reverse (-)
20256136 .. 20256702
567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1139700.v1.1.491

Sequence Viewer

Length: 567 bp
ATGAAGAGTTTCATTTCCAAAGAATCCATTGCCGTATTAATACTTCTTCTTTCGGCAATTTGCTTGGTCACTGAAGCTCAGCAATGTCGTCCAAGCGGCAGAATTAGAGGAAGGAAGGCCCCTCCAGGACAATGCAACCAGGAGAATGACTCTGATTGCTGTAAGGCCGGAAAAATGTACACAACCTACAAATGTTCACCACCACTGTCTGGCAGCACCAAGGCCTACCTCACTCTTAACAGTTTTGAGAAAAACGGTGATGGAGGCGGTCCATCAGAATGTGACAACAAGTATCACAATGATAACACACCGGTTGTTGCATTGTCGACTGGGTGGTACAACCATGGAAAAAGGTGCCATAACAACATCACCATTAGTGCTAATGGGCGTAGTGTGGTGGCGATGGTGGTCGATGAGTGTGACTCTACTGAGGGATGTGATGCAGATCACGACTACCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCGAAGGCTGTTTGGAAAGCCTTGGGCGTGCCCGAGGACAATTGGGGTGGCTTAGATATTACGTGGTCCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.29

Weight (kDa)

5.53

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 25 - 188 9e-67 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 96, 267
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 179, 338
AfiI CCNNNNNNNGG 1 cut(s) 209
AgeI ACCGGT 1 cut(s) 310
AjnI CCWGG 2 cut(s) 124, 138
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 3 cut(s) 117, 165, 222
ApeKI GCWGC 1 cut(s) 213
AseI ATTAAT 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 118, 269, 555
AsuHPI GGTGA 3 cut(s) 189, 269, 361
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 2 cut(s) 269, 555
BaeGI GKGCMC 1 cut(s) 522
BanI GGYRCC 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
BbvI GCAGC 1 cut(s) 225
BccI CCATC 3 cut(s) 254, 280, 397
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 2 cut(s) 126, 140
BglI GCCNNNNNGGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 97, 214
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 98, 215
Bme1390I CCNGG 2 cut(s) 126, 140
Bme18I GGWCC 2 cut(s) 269, 555
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 118, 269, 555
BmiI GGNNCC 2 cut(s) 120, 356
BmrFI CCNGG 2 cut(s) 126, 140
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 3 cut(s) 430, 475, 550
BmuI ACTGGG 1 cut(s) 339
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 407, 439
BpmI CTGGAG 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 4 cut(s) 219, 343, 510, 522
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 2 cut(s) 27, 89
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 2 cut(s) 126, 140
BseDI CCNNGG 4 cut(s) 219, 343, 510, 522
BseGI GGATG 1 cut(s) 440
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 2 cut(s) 27, 89
BseMII CTCAG 2 cut(s) 92, 420
BseNI ACTGG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 3 cut(s) 119, 167, 224
BshNI GGYRCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 2 cut(s) 168, 311
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 3 cut(s) 119, 167, 224
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 522
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 1 cut(s) 445
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 2 cut(s) 96, 267
BspANI GGCC 3 cut(s) 119, 167, 224
BspCNI CTCAG 2 cut(s) 91, 421
BspLI GGNNCC 2 cut(s) 120, 356
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 2 cut(s) 27, 89
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 219, 343, 510, 522
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 3 cut(s) 219, 343, 510
Bst2UI CCWGG 2 cut(s) 126, 140
Bst4CI ACNGT 3 cut(s) 207, 242, 257
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 4 cut(s) 78, 429, 541, 564
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 440
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 2 cut(s) 126, 140
BstSCI CCNGG 2 cut(s) 124, 138
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 3 cut(s) 119, 167, 224
BtgI CCRYGG 1 cut(s) 343
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 69, 203
Cac8I GCNNGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 118, 269, 555
Csp6I GTAC 2 cut(s) 178, 337
CspAI ACCGGT 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 1 cut(s) 344
CviJI RGCY 8 cut(s) 77, 119, 167, 224, 460, 497, 509, 540
CviKI_1 RGCY 8 cut(s) 77, 119, 167, 224, 460, 497, 509, 540
CviQI GTAC 2 cut(s) 178, 337
DdeI CTNAG 4 cut(s) 78, 429, 541, 564
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco130I CCWWGG 3 cut(s) 219, 343, 510
Eco147I AGGCCT 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 269, 555
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 124, 138
EcoT14I CCWWGG 3 cut(s) 219, 343, 510
ErhI CCWWGG 3 cut(s) 219, 343, 510
FaeI CATG 1 cut(s) 347
FaiI YATR 2 cut(s) 345, 360
FatI CATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 97, 214
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 97, 214
GluI GCNGC 2 cut(s) 97, 214
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 3 cut(s) 119, 167, 224
HapII CCGG 2 cut(s) 168, 311
Hin1II CATG 1 cut(s) 347
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 3 cut(s) 23, 149, 422
HpaII CCGG 2 cut(s) 168, 311
HphI GGTGA 3 cut(s) 189, 269, 361
Hpy166II GTNNAC 3 cut(s) 180, 197, 327
Hpy188I TCNGA 3 cut(s) 154, 277, 559
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 3 cut(s) 180, 197, 327
HpyAV CCTTC 3 cut(s) 105, 109, 487
HpyCH4III ACNGT 3 cut(s) 207, 242, 257
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 3 cut(s) 135, 320, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 4 cut(s) 78, 429, 541, 564
HpySE526I ACGT 1 cut(s) 551
Hsp92II CATG 1 cut(s) 347
Kzo9I GATC 1 cut(s) 445
LpnPI CCDG 9 cut(s) 111, 125, 138, 152, 181, 195, 315, 324, 470
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 3 cut(s) 430, 475, 550
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 3 cut(s) 67, 281, 419
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 2 cut(s) 16, 38
MfeI CAATTG 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 3 cut(s) 57, 102, 529
MlyI GAGTC 2 cut(s) 143, 416
MnlI CCTC 8 cut(s) 101, 132, 239, 257, 424, 471, 499, 517
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 38, 237
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 2 cut(s) 168, 311
MspR9I CCNGG 2 cut(s) 126, 140
MunI CAATTG 1 cut(s) 529
MvaI CCWGG 2 cut(s) 126, 140
MwoI GCNNNNNNNGC 1 cut(s) 494
NcoI CCATGG 1 cut(s) 343
NdeII GATC 1 cut(s) 445
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 2 cut(s) 120, 356
NmuCI GTSAC 3 cut(s) 67, 281, 419
PceI AGGCCT 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 2 cut(s) 98, 215
PleI GAGTC 2 cut(s) 143, 416
PpsI GAGTC 2 cut(s) 143, 416
Ppu21I YACGTR 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 124, 138
PspGI CCWGG 2 cut(s) 124, 138
PspN4I GGNNCC 2 cut(s) 120, 356
PspPI GGNCC 3 cut(s) 118, 269, 555
RsaI GTAC 2 cut(s) 179, 338
RsaNI GTAC 2 cut(s) 178, 337
RseI CAYNNNNRTG 1 cut(s) 277
SalI GTCGAC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 38, 237
SatI GCNGC 2 cut(s) 97, 214
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 3 cut(s) 118, 269, 555
SchI GAGTC 2 cut(s) 143, 416
ScrFI CCNGG 2 cut(s) 126, 140
SduI GDGCHC 1 cut(s) 522
SetI ASST 5 cut(s) 79, 188, 231, 356, 554
SfaNI GCATC 3 cut(s) 430, 475, 550
SinI GGWCC 2 cut(s) 269, 555
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 3 cut(s) 57, 102, 529
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 2 cut(s) 96, 267
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 124, 138
StyI CCWWGG 3 cut(s) 219, 343, 510
TaaI ACNGT 3 cut(s) 207, 242, 257
TaiI ACGT 1 cut(s) 554
TaqI TCGA 3 cut(s) 326, 411, 491
TasI AATT 3 cut(s) 57, 102, 529
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 38, 237
Tru9I TTAA 2 cut(s) 38, 237
TscAI CASTG 2 cut(s) 76, 210
TseFI GTSAC 3 cut(s) 67, 281, 419
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 3 cut(s) 67, 281, 419
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 76, 210
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 269, 555
VspI ATTAAT 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.