MD01G1055500.v1.1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000242
Physical Location & Seq
Reverse (-)
16050913 .. 16051485
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1055500.v1.1.491

Sequence Viewer

Length: 573 bp
ATGAAAAACAAGATTTATTCAGGTGCTTTTCTCTTCATCTTGATCATCCTTGCTACGAACTGGTTGAGCATTGACGCTCAAAAATGCAAACCTAGTGGCAAGCTTAGGGGGAAAAAGCCTCCTCGAGGACAATGTAACAAAGGGAATGACTCCGAGTGCTGCAAAAATGGTCAGCTTTACCCCATCTTCAAGTGCTCGCCGCAGGTGTCTAAGCATACGAAAGCAACCTTGACCATCAACAGCTTTCAAAAGGGTGGTGATGGCGGCGGTCCATCAGCATGTGACAATAAGTACCACTCGGATAATACCCCTATTGTGGCATTGTCAACGGGGTGGTTCGACAAAAGGAGACGGTGTTTCGGCCACATTACCATCCATGGTAATGGAAGGAGCGTCAAAGCGATGGTTGTCGACGAGTGTGACTCCACCATGGGATGTGATGCCGAGCACGATTACCAGCCTCCGTGTCCTAACAATATTGTTGATGCCTCTAAAGCTGTTTGGAAGGCCTTGGGGGTGTCAGAAAGTGACCCCAGGCGGGGTTTTATGGATATATTCTGGTCTGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.86

Weight (kDa)

9.0

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 26 - 190 1.2e-61 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AbsI CCTCGAGG 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 411
AciI CCGC 4 cut(s) 200, 264, 267, 538
AcoI YGGCCR 1 cut(s) 361
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 125, 316, 538, 539
AgsI TTSAA 2 cut(s) 190, 248
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 4 cut(s) 103, 175, 243, 497
AluI AGCT 4 cut(s) 103, 175, 243, 497
Alw21I GWGCWC 2 cut(s) 197, 450
Alw26I GTCTC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 2 cut(s) 361, 507
ApeKI GCWGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 197, 450
BbvI GCAGC 1 cut(s) 146
BccI CCATC 6 cut(s) 191, 242, 254, 280, 380, 397
BciT130I CCWGG 1 cut(s) 535
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 3 cut(s) 160, 200, 265
BlsI GCNGC 3 cut(s) 161, 201, 266
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 3 cut(s) 430, 475, 556
BplI GAGNNNNNCTC 2 cut(s) 407, 439
Bpu10I CCTNAGC 1 cut(s) 104
BsaJI CCNNGG 4 cut(s) 376, 429, 510, 533
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 316, 538, 539
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 4 cut(s) 376, 429, 510, 533
BseGI GGATG 3 cut(s) 45, 372, 440
BseLI CCNNNNNNNGG 4 cut(s) 125, 316, 538, 539
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 363, 509
BsiHKAI GWGCWC 2 cut(s) 197, 450
BsiHKCI CYCGRG 1 cut(s) 123
BslI CCNNNNNNNGG 4 cut(s) 125, 316, 538, 539
BsmAI GTCTC 1 cut(s) 343
BsmBI CGTCTC 1 cut(s) 343
BsnI GGCC 2 cut(s) 363, 509
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 197, 450
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 2 cut(s) 376, 429
BspACI CCGC 4 cut(s) 200, 264, 267, 538
BspANI GGCC 2 cut(s) 363, 509
BspMI ACCTGC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 376, 429, 510, 533
BssMI GATC 1 cut(s) 42
BssT1I CCWWGG 3 cut(s) 376, 429, 510
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 101, 197
BstDEI CTNAG 2 cut(s) 104, 210
BstDSI CCRYGG 2 cut(s) 376, 429
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 45, 372, 440
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuRI GGCC 2 cut(s) 363, 509
BtgI CCRYGG 2 cut(s) 376, 429
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 3 cut(s) 45, 372, 440
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 101, 197
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 2 cut(s) 83, 382
Csp6I GTAC 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 279, 377, 430
CviJI RGCY 8 cut(s) 103, 118, 175, 243, 363, 460, 497, 509
CviKI_1 RGCY 8 cut(s) 103, 118, 175, 243, 363, 460, 497, 509
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 104, 210
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 3 cut(s) 376, 429, 510
Eco147I AGGCCT 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 3 cut(s) 376, 429, 510
ErhI CCWWGG 3 cut(s) 376, 429, 510
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 3 cut(s) 282, 380, 433
FaiI YATR 6 cut(s) 216, 280, 378, 431, 548, 554
FatI CATG 3 cut(s) 278, 376, 429
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 160, 200, 265
FokI GGATG 3 cut(s) 32, 359, 447
Fsp4HI GCNGC 3 cut(s) 160, 200, 265
FspBI CTAG 1 cut(s) 93
GluI GCNGC 3 cut(s) 160, 200, 265
HaeIII GGCC 2 cut(s) 363, 509
HgaI GACGC 2 cut(s) 83, 382
Hin1II CATG 3 cut(s) 282, 380, 433
HincII GTYRAC 2 cut(s) 327, 412
HindII GTYRAC 2 cut(s) 327, 412
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 149, 422
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 327, 412
Hpy188I TCNGA 4 cut(s) 154, 301, 523, 565
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 327, 412
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 381, 499
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 87, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 104, 210
Hsp92II CATG 3 cut(s) 282, 380, 433
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 7 cut(s) 6, 46, 188, 470, 520, 544, 547
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 3 cut(s) 430, 475, 556
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 4 cut(s) 134, 281, 419, 527
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 25, 178
MhlI GDGCHC 2 cut(s) 197, 450
MlyI GAGTC 2 cut(s) 143, 416
MnlI CCTC 5 cut(s) 119, 129, 132, 471, 499
MslI CAYNNNNRTG 2 cut(s) 277, 381
MspR9I CCNGG 1 cut(s) 535
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 1 cut(s) 494
NcoI CCATGG 2 cut(s) 376, 429
NdeII GATC 1 cut(s) 42
NlaIII CATG 3 cut(s) 282, 380, 433
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 281, 419, 527
NspI RCATGY 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 509
PkrI GCNGC 3 cut(s) 161, 201, 266
PleI GAGTC 2 cut(s) 143, 416
PpsI GAGTC 2 cut(s) 143, 416
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspPI GGNCC 1 cut(s) 269
PspXI VCTCGAGB 1 cut(s) 123
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 277, 381
SalI GTCGAC 1 cut(s) 410
SatI GCNGC 3 cut(s) 160, 200, 265
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 143, 416
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 2 cut(s) 197, 450
SetI ASST 8 cut(s) 25, 94, 105, 177, 207, 230, 245, 499
SfaNI GCATC 3 cut(s) 430, 475, 556
Sfr274I CTCGAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 277, 381
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 4 cut(s) 200, 264, 267, 538
SspI AATATT 1 cut(s) 478
SspMI CTAG 1 cut(s) 93
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 3 cut(s) 376, 429, 510
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 3 cut(s) 124, 339, 411
TauI GCSGC 2 cut(s) 202, 267
TseFI GTSAC 3 cut(s) 281, 419, 527
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 3 cut(s) 281, 419, 527
TspDTI ATGAA 2 cut(s) 17, 25
TspGWI ACGGA 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 123
XceI RCATGY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.