Rh1DG252200

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000242
Physical Location & Seq
Forward (+)
46578105 .. 46582841
4737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG252200.1

Sequence Viewer

Length: 744 bp
ATGTCCGAATGCTGCAAAAAGGGCAAGCTTTACCCCACTTACAAGTGGTCACCACATGTGTCTAAGTCTACAAAAGCAACCTTGACACTCAACAGCTTTCAGAAAGGTGGTGATGGTGGCAGACCATCTGAATGTGATGGTAGATACCACTCGGATAGCACCCCTGTGGTGGCATTGTCAACAGGGTGGTTTAACAATAGCAAGAGGTGTTTGCACTACATTACCATCCATGCTAATGGGAGGAGTGTGAAGGCAAAGGTGGTTGATGAGTGTGACTCCACAATGGGGTGTGATGGTGAACATGATTACCAGCCTCCATGTCCTAATAATATTGTTGATGCCTCTAAAGCTGTCTGGAAGGCCTTGGGAGTTATAAATGACGGGGGTGAAATGGAAATACGCTGGTCCTGTGAATGTGGCAGATTTCCTATTGCTGTTGGAAGTGGACCAAAGATTGAGTTGTCGAAAAGGTCCAAGTTCTGCATGTTTGAAAGATTTCCAATCGATGGTAAAAGTGGACCGGAGATTGAATTTAAGGAAAGATCCAAGGCGATCTACAAATATGATAGATTTCCAATTGATGTTGGAAGTGGACCGGAGATTGCGTTTAAGGAAAGGTCCAAGGTCTGGAAATGTGATAGATATCCAATTGATGTTGGAAGTGGACTGGAGATTGAGTTTAAGGAAAGGTCCAAGGTCTGGAAATGTGATAGATATCCAATTGATGTCGGTAGTAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.72

Weight (kDa)

8.73

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 137 6e-55 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB7I CCANNNNNTGG 3 cut(s) 506, 627, 699
AccI GTMKAC 1 cut(s) 68
AclWI GGATC 1 cut(s) 537
AcsI RAATTY 1 cut(s) 530
AfiI CCNNNNNNNGG 5 cut(s) 169, 285, 506, 627, 699
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 2 cut(s) 491, 530
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 3 cut(s) 28, 96, 350
AluI AGCT 3 cut(s) 28, 96, 350
AlwI GGATC 1 cut(s) 537
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
AsuHPI GGTGA 4 cut(s) 42, 122, 308, 398
AvaII GGWCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
BccI CCATC 6 cut(s) 107, 131, 133, 233, 287, 500
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme18I GGWCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
BmgT120I GGNCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
BmsI GCATC 1 cut(s) 328
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 689
Bsa29I ATCGAT 1 cut(s) 504
BsaBI GATNNNNATC 2 cut(s) 642, 714
BsaJI CCNNGG 4 cut(s) 363, 546, 621, 693
BsaWI WCCGGW 2 cut(s) 520, 595
BsaXI ACNNNNNCTCC 4 cut(s) 590, 620, 662, 692
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 285, 506, 627, 699
Bse1I ACTGG 1 cut(s) 672
Bse8I GATNNNNATC 2 cut(s) 642, 714
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 363, 546, 621, 693
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 2 cut(s) 642, 714
BseLI CCNNNNNNNGG 5 cut(s) 169, 285, 506, 627, 699
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 1 cut(s) 256
BshFI GGCC 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 504
BsiSI CCGG 2 cut(s) 521, 596
BslI CCNNNNNNNGG 5 cut(s) 169, 285, 506, 627, 699
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 542, 552
BspANI GGCC 1 cut(s) 362
BspDI ATCGAT 1 cut(s) 504
BspPI GGATC 1 cut(s) 537
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 4 cut(s) 363, 546, 621, 693
BssMI GATC 2 cut(s) 542, 552
BssT1I CCWWGG 4 cut(s) 363, 546, 621, 693
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 48
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 2 cut(s) 545, 555
BstMBI GATC 2 cut(s) 542, 552
BstMWI GCNNNNNNNGC 2 cut(s) 21, 347
BstNSI RCATGY 2 cut(s) 59, 487
BstPI GGTNACC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 542
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 542
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 362
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
ClaI ATCGAT 1 cut(s) 504
CviAII CATG 5 cut(s) 56, 230, 302, 318, 484
CviJI RGCY 5 cut(s) 28, 96, 313, 350, 362
CviKI_1 RGCY 5 cut(s) 28, 96, 313, 350, 362
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 544, 554
DpnII GATC 2 cut(s) 542, 552
Eco130I CCWWGG 4 cut(s) 363, 546, 621, 693
Eco147I AGGCCT 1 cut(s) 362
Eco32I GATATC 2 cut(s) 644, 716
Eco47I GGWCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
Eco91I GGTNACC 1 cut(s) 48
EcoO65I GGTNACC 1 cut(s) 48
EcoRV GATATC 2 cut(s) 644, 716
EcoT14I CCWWGG 4 cut(s) 363, 546, 621, 693
ErhI CCWWGG 4 cut(s) 363, 546, 621, 693
FaeI CATG 5 cut(s) 59, 233, 305, 321, 487
FaiI YATR 7 cut(s) 57, 231, 303, 319, 374, 485, 564
FatI CATG 5 cut(s) 55, 229, 301, 317, 483
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 1 cut(s) 362
HapII CCGG 2 cut(s) 521, 596
Hin1II CATG 5 cut(s) 59, 233, 305, 321, 487
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 521, 596
HphI GGTGA 4 cut(s) 42, 122, 308, 398
Hpy166II GTNNAC 8 cut(s) 69, 180, 299, 446, 518, 593, 665, 737
Hpy188I TCNGA 5 cut(s) 7, 102, 130, 154, 743
Hpy188III TCNNGA 3 cut(s) 355, 628, 700
Hpy8I GTNNAC 8 cut(s) 69, 180, 299, 446, 518, 593, 665, 737
HpyAV CCTTC 2 cut(s) 244, 352
HpyCH4V TGCA 3 cut(s) 15, 214, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 347
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 5 cut(s) 59, 233, 305, 321, 487
Kzo9I GATC 2 cut(s) 542, 552
LweI GCATC 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 48, 272
MalI GATC 2 cut(s) 544, 554
MboI GATC 2 cut(s) 542, 552
MfeI CAATTG 3 cut(s) 576, 648, 720
MflI RGATCY 1 cut(s) 542
MluCI AATT 4 cut(s) 530, 576, 648, 720
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 3 cut(s) 418, 565, 637
MnlI CCTC 4 cut(s) 198, 234, 324, 352
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 4 cut(s) 192, 534, 609, 681
MslI CAYNNNNRTG 3 cut(s) 130, 164, 234
MspI CCGG 2 cut(s) 521, 596
MunI CAATTG 3 cut(s) 576, 648, 720
Mva1269I GAATGC 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 21, 347
NdeII GATC 2 cut(s) 542, 552
NlaIII CATG 5 cut(s) 59, 233, 305, 321, 487
NmuCI GTSAC 2 cut(s) 48, 272
NspI RCATGY 2 cut(s) 59, 487
OliI CACNNNNGTG 1 cut(s) 164
PceI AGGCCT 1 cut(s) 362
PciI ACATGT 1 cut(s) 55
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 495
PflMI CCANNNNNTGG 3 cut(s) 506, 627, 699
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 55
PsiI TTATAA 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 48
PspPI GGNCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
PsuI RGATCY 1 cut(s) 542
RseI CAYNNNNRTG 3 cut(s) 130, 164, 234
SaqAI TTAA 4 cut(s) 192, 534, 609, 681
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 542, 552
Sau96I GGNCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
SchI GAGTC 1 cut(s) 269
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
SmiMI CAYNNNNRTG 3 cut(s) 130, 164, 234
Sse9I AATT 4 cut(s) 530, 576, 648, 720
SseBI AGGCCT 1 cut(s) 362
SspI AATATT 1 cut(s) 331
StuI AGGCCT 1 cut(s) 362
StyI CCWWGG 4 cut(s) 363, 546, 621, 693
TaqI TCGA 2 cut(s) 464, 504
TasI AATT 4 cut(s) 530, 576, 648, 720
Tru1I TTAA 4 cut(s) 192, 534, 609, 681
Tru9I TTAA 4 cut(s) 192, 534, 609, 681
TseFI GTSAC 2 cut(s) 48, 272
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 2 cut(s) 48, 272
Van91I CCANNNNNTGG 3 cut(s) 506, 627, 699
VpaK11BI GGWCC 7 cut(s) 405, 446, 471, 518, 593, 618, 690
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 59, 487
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.