Rmu_sc0020815.1_g000003

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020815.1
OG0000242
Physical Location & Seq
Reverse (-)
6652 .. 7134
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020815.1_g000003.1.cds

Sequence Viewer

Length: 483 bp
atgacttgcttcttctcaaaagggtctattctagtcattctccttttagcaattttcttggttagtgaagctcaccaatgtcatccaagtggaagaatcagaggaaggaagccccttcctggacaatgtaaccagcaggatgactttgactgctgtaaagctggaaaaatgtacccaacctacacttgctcaccaccaatgtccggtaacaccaaggcatacctcactctcaatagctttgaggcaggtggtgaaggaggaggcccatctgaatgtgacggtaagtatcacaataacaacactccagttgttgcattatccacaggatggtacaacggtggatcaaggtgccttaacaacatcagaattaatggtaacgggcgtagcgtggtggccatggtggtggatgagtgcgactctattgaggtatggtctcaatcatggtgtgacttggatctaacacttgcagtgcgggaaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.36

Weight (kDa)

5.87

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AciI CCGC 1 cut(s) 472
AclWI GGATC 2 cut(s) 349, 462
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 3 cut(s) 119, 203, 327
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 71, 161, 237, 480
AluI AGCT 4 cut(s) 71, 161, 237, 480
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 2 cut(s) 349, 462
AoxI GGCC 2 cut(s) 262, 393
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 65, 183, 263
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BccI CCATC 2 cut(s) 274, 321
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 32, 481
BfuAI ACCTGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 213, 396
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 203, 327
Bse1I ACTGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 213, 396
BseGI GGATG 4 cut(s) 82, 145, 332, 412
BseLI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 264, 395
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BsmAI GTCTC 1 cut(s) 438
BsnI GGCC 2 cut(s) 264, 395
Bso31I GGTCTC 1 cut(s) 438
Bsp143I GATC 2 cut(s) 341, 454
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 472
BspANI GGCC 2 cut(s) 264, 395
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 349, 462
BspT107I GGYRCC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 438
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 213, 396
BssMI GATC 2 cut(s) 341, 454
BssT1I CCWWGG 2 cut(s) 213, 396
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 281, 338
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 4 cut(s) 82, 145, 332, 412
BstKTI GATC 2 cut(s) 344, 457
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 2 cut(s) 341, 454
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 2 cut(s) 264, 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 4 cut(s) 82, 145, 332, 412
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 2 cut(s) 397, 441
CviJI RGCY 7 cut(s) 71, 112, 161, 237, 264, 395, 480
CviKI_1 RGCY 7 cut(s) 71, 112, 161, 237, 264, 395, 480
CviQI GTAC 2 cut(s) 172, 331
DpnI GATC 2 cut(s) 343, 456
DpnII GATC 2 cut(s) 341, 454
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 213, 396
Eco31I GGTCTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 213, 396
ErhI CCWWGG 2 cut(s) 213, 396
FaeI CATG 2 cut(s) 400, 444
FaiI YATR 4 cut(s) 220, 398, 430, 442
FatI CATG 2 cut(s) 396, 440
FauI CCCGC 1 cut(s) 465
FokI GGATG 4 cut(s) 69, 152, 339, 419
FspBI CTAG 2 cut(s) 32, 481
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 264, 395
HapII CCGG 1 cut(s) 204
Hin1II CATG 2 cut(s) 400, 444
HinfI GANTC 2 cut(s) 96, 416
HpaII CCGG 1 cut(s) 204
HphI GGTGA 3 cut(s) 65, 183, 263
Hpy188I TCNGA 3 cut(s) 101, 271, 365
HpyAV CCTTC 3 cut(s) 99, 125, 248
HpyCH4III ACNGT 2 cut(s) 281, 338
HpyCH4V TGCA 2 cut(s) 314, 467
Hsp92II CATG 2 cut(s) 400, 444
Kzo9I GATC 2 cut(s) 341, 454
LpnPI CCDG 9 cut(s) 105, 122, 132, 146, 147, 217, 231, 309, 318
MaeI CTAG 2 cut(s) 32, 481
MaeIII GTNAC 5 cut(s) 128, 206, 275, 374, 446
MalI GATC 2 cut(s) 343, 456
MboI GATC 2 cut(s) 341, 454
MboII GAAGA 2 cut(s) 4, 105
MflI RGATCY 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 51, 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 6 cut(s) 95, 233, 235, 251, 254, 418
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 354, 369
MslI CAYNNNNRTG 3 cut(s) 87, 271, 401
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 341, 454
NlaIII CATG 2 cut(s) 400, 444
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 275, 446
PaqCI CACCTGC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 327
PfoI TCCNGGA 1 cut(s) 118
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 3 cut(s) 87, 271, 401
SaqAI TTAA 2 cut(s) 354, 369
Sau3AI GATC 2 cut(s) 341, 454
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 120
SetI ASST 9 cut(s) 73, 163, 182, 225, 239, 250, 350, 429, 482
SmiMI CAYNNNNRTG 3 cut(s) 87, 271, 401
Sse9I AATT 2 cut(s) 51, 366
SsiI CCGC 1 cut(s) 472
SspMI CTAG 2 cut(s) 32, 481
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 213, 396
TaaI ACNGT 2 cut(s) 281, 338
TasI AATT 2 cut(s) 51, 366
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 354, 369
Tru9I TTAA 2 cut(s) 354, 369
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 275, 446
Tsp45I GTSAC 2 cut(s) 275, 446
TspRI CASTG 1 cut(s) 474
Van91I CCANNNNNTGG 1 cut(s) 327
VspI ATTAAT 1 cut(s) 369
XspI CTAG 2 cut(s) 32, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.