Rmu_sc0000942.1_g000020

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000942.1
OG0000242
Physical Location & Seq
Reverse (-)
114709 .. 115012
304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000942.1_g000020.1.cds

Sequence Viewer

Length: 231 bp
atgctgcacaaaagctttgagaaaggcggtgatggtggtggaccgtctgaatgtgacaatcaattccactcggataacaccacggtcgtggcattgtccaccgggaggttcaacaataggaagaggtgttcacactacattgccatgcatgctaatggaaggagtgtgaaagccaaggttgttgatgagtgtgactccacaatgggttgtgatcttgttcatgattcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.26

Weight (kDa)

6.48

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 41
BccI CCATC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 103
BfaI CTAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpuMI CCSGG 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 81, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 81, 174
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 27
BspHI TCATGA 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 81, 174
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 45, 85
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 3 cut(s) 145, 149, 221
CviJI RGCY 2 cut(s) 15, 173
CviKI_1 RGCY 2 cut(s) 15, 173
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 148, 152, 224
FaiI YATR 3 cut(s) 146, 150, 222
FatI CATG 3 cut(s) 144, 148, 220
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 229
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 102
Hin1II CATG 3 cut(s) 148, 152, 224
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 194, 224
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 41, 99, 131
Hpy188I TCNGA 2 cut(s) 49, 73
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 3 cut(s) 41, 99, 131
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 45, 85
HpyCH4V TGCA 2 cut(s) 7, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92II CATG 3 cut(s) 148, 152, 224
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 1 cut(s) 115
MaeI CTAG 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 53, 191
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 133
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 99, 117
Mph1103I ATGCAT 1 cut(s) 150
MslI CAYNNNNRTG 3 cut(s) 86, 143, 153
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 103
NdeII GATC 1 cut(s) 211
NlaIII CATG 3 cut(s) 148, 152, 224
NmuCI GTSAC 2 cut(s) 53, 191
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 1 cut(s) 152
OliI CACNNNNGTG 1 cut(s) 86
PaeI GCATGC 1 cut(s) 152
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 41
RseI CAYNNNNRTG 3 cut(s) 86, 143, 153
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 103
SetI ASST 4 cut(s) 17, 110, 128, 180
SgeI CNNG 9 cut(s) 82, 94, 100, 114, 115, 157, 161, 187, 227
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 3 cut(s) 86, 143, 153
SphI GCATGC 1 cut(s) 152
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 45, 85
TasI AATT 1 cut(s) 62
TfiI GAWTC 1 cut(s) 224
TseFI GTSAC 2 cut(s) 53, 191
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 53, 191
TspDTI ATGAA 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 41
XceI RCATGY 1 cut(s) 152
XspI CTAG 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.