pycom01g08120

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000242
Physical Location & Seq
Forward (+)
9113992 .. 9116082
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08120.2

Sequence Viewer

Length: 567 bp
ATGAAGAGTTTCATTTCCAAAGAGTCCATTGTCCTACTAGTAATTCTTCTTTCGGCAATTTGTTTGGTCGCTGAAGCTCAACAATGTCGTCCAAGCGGCAAAATCAGAGGAAGGAAGGCCCCTCCTGGACAATGCAACCAGGAAAATGATTCTGATTGTTGTAAGCCGGGCAAAATGTACCCAACCTACACATGTTCACCGCCATTGTCTGGGAGCACCAAGGCCACCCTCACCCTTAACAGTTTCGAGAAAGGTGGAGATGGTGGCGGTCCATCAGAATGTGACAACCAATACCACAATGACAACACACCAGTTGTGGCACTGTCCACCGGATGGTATAGCAACGGAGATAGGTGCCATAAACAAATCAGAATTAATGGTAACGGACGTAGCGTGTTGGCCATGGTGGTGGATGAATGTGACTCTACTGAGGGATGTGATGCAGATCATGATTACCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCAAAAGCTGTTTGGAAAGCCTTGGGTGTGCCTGAAGACCAATGGGGTGGCCTAGATATCACTTGGTCCGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.27

Weight (kDa)

5.02

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AccB7I CCANNNNNTGG 2 cut(s) 209, 333
AciI CCGC 3 cut(s) 96, 200, 267
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 93, 543
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 209, 333
AflIII ACRYGT 1 cut(s) 191
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 124, 138
AluBI AGCT 2 cut(s) 77, 497
AluI AGCT 2 cut(s) 77, 497
Alw21I GWGCWC 1 cut(s) 218
AoxI GGCC 4 cut(s) 117, 222, 399, 538
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 118, 269, 555
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 189, 223
AvaII GGWCC 2 cut(s) 269, 555
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 3 cut(s) 254, 280, 327
BciT130I CCWGG 2 cut(s) 126, 140
BcnI CCSGG 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 542
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 3 cut(s) 126, 140, 168
Bme18I GGWCC 2 cut(s) 269, 555
BmgT120I GGNCC 3 cut(s) 118, 269, 555
BmiI GGNNCC 2 cut(s) 120, 356
BmrFI CCNGG 3 cut(s) 126, 140, 168
BmsI GCATC 2 cut(s) 430, 475
BpiI GAAGAC 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 219, 402, 510
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 333
Bse1I ACTGG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 2 cut(s) 126, 140
BseDI CCNNGG 3 cut(s) 219, 402, 510
BseGI GGATG 3 cut(s) 338, 418, 440
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 209, 333
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 311
BshFI GGCC 4 cut(s) 119, 224, 401, 540
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 2 cut(s) 167, 330
BslI CCNNNNNNNGG 2 cut(s) 209, 333
BsnI GGCC 4 cut(s) 119, 224, 401, 540
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 445
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 3 cut(s) 96, 200, 267
BspANI GGCC 4 cut(s) 119, 224, 401, 540
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 120, 356
BspT107I GGYRCC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 219, 402, 510
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 3 cut(s) 219, 402, 510
Bst2UI CCWGG 2 cut(s) 126, 140
Bst4CI ACNGT 2 cut(s) 242, 324
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 3 cut(s) 338, 418, 440
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 2 cut(s) 126, 140
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 124, 138, 166
BstV2I GAAGAC 1 cut(s) 531
BstXI CCANNNNNNTGG 2 cut(s) 409, 536
BsuRI GGCC 4 cut(s) 119, 224, 401, 540
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 3 cut(s) 338, 418, 440
BtsIMutI CAGTG 1 cut(s) 320
CciI TCATGA 1 cut(s) 448
Cfr13I GGNCC 3 cut(s) 118, 269, 555
Csp6I GTAC 1 cut(s) 178
CviAII CATG 3 cut(s) 192, 403, 449
CviJI RGCY 9 cut(s) 77, 119, 166, 224, 401, 460, 497, 509, 540
CviKI_1 RGCY 9 cut(s) 77, 119, 166, 224, 401, 460, 497, 509, 540
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 429
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 219, 402, 510
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 269, 555
Eco57I CTGAAG 2 cut(s) 93, 543
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 124, 138
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 3 cut(s) 219, 402, 510
ErhI CCWWGG 3 cut(s) 219, 402, 510
FaeI CATG 3 cut(s) 195, 406, 452
FaiI YATR 5 cut(s) 193, 339, 360, 404, 450
FatI CATG 3 cut(s) 191, 402, 448
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 3 cut(s) 345, 425, 447
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 38, 542
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 4 cut(s) 119, 224, 401, 540
HapII CCGG 2 cut(s) 167, 330
Hin1II CATG 3 cut(s) 195, 406, 452
HinfI GANTC 3 cut(s) 23, 149, 422
HpaII CCGG 2 cut(s) 167, 330
HphI GGTGA 2 cut(s) 189, 223
Hpy166II GTNNAC 2 cut(s) 197, 327
Hpy188I TCNGA 5 cut(s) 107, 154, 277, 371, 559
Hpy188III TCNNGA 2 cut(s) 247, 449
Hpy8I GTNNAC 2 cut(s) 197, 327
HpyAV CCTTC 2 cut(s) 105, 109
HpyCH4III ACNGT 2 cut(s) 242, 324
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 135, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 195, 406, 452
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 213
LweI GCATC 2 cut(s) 430, 475
MaeI CTAG 2 cut(s) 38, 542
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 281, 380, 419
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 16, 38, 536
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 3 cut(s) 42, 57, 372
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 2 cut(s) 32, 416
MnlI CCTC 6 cut(s) 101, 132, 239, 424, 471, 499
Mox20I TGGCCA 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 401
MseI TTAA 2 cut(s) 237, 375
MslI CAYNNNNRTG 2 cut(s) 277, 407
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 2 cut(s) 167, 330
MspR9I CCNGG 3 cut(s) 126, 140, 168
MvaI CCWGG 2 cut(s) 126, 140
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 1 cut(s) 402
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 195, 406, 452
NlaIV GGNNCC 2 cut(s) 120, 356
NmuCI GTSAC 2 cut(s) 281, 419
NspI RCATGY 1 cut(s) 195
PagI TCATGA 1 cut(s) 448
PciI ACATGT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 209, 333
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 2 cut(s) 31, 416
PpsI GAGTC 2 cut(s) 31, 416
PscI ACATGT 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 124, 138
PspGI CCWGG 2 cut(s) 124, 138
PspN4I GGNNCC 2 cut(s) 120, 356
PspPI GGNCC 3 cut(s) 118, 269, 555
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 277, 407
SaqAI TTAA 2 cut(s) 237, 375
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 3 cut(s) 118, 269, 555
SchI GAGTC 2 cut(s) 32, 416
ScrFI CCNGG 3 cut(s) 126, 140, 168
SduI GDGCHC 1 cut(s) 218
SetI ASST 6 cut(s) 79, 188, 256, 356, 391, 499
SfaNI GCATC 2 cut(s) 430, 475
SinI GGWCC 2 cut(s) 269, 555
SmiMI CAYNNNNRTG 2 cut(s) 277, 407
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 3 cut(s) 42, 57, 372
SsiI CCGC 3 cut(s) 96, 200, 267
SspMI CTAG 2 cut(s) 38, 542
StyD4I CCNGG 3 cut(s) 124, 138, 166
StyI CCWWGG 3 cut(s) 219, 402, 510
TaaI ACNGT 2 cut(s) 242, 324
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 42, 57, 372
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 237, 375
Tru9I TTAA 2 cut(s) 237, 375
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 2 cut(s) 281, 419
Tsp45I GTSAC 2 cut(s) 281, 419
TspDTI ATGAA 2 cut(s) 17, 429
TspGWI ACGGA 2 cut(s) 360, 399
TspRI CASTG 1 cut(s) 327
Van91I CCANNNNNTGG 2 cut(s) 209, 333
VpaK11BI GGWCC 2 cut(s) 269, 555
VspI ATTAAT 1 cut(s) 375
XceI RCATGY 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 38, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.