Prupe.2G166000_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Forward (+)
21508011 .. 21508583
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G166000.1

Sequence Viewer

Length: 573 bp
ATGAAGAGCTCAGCAATTTTCTCAAGAGGATCCATTGCCCTACTCATCATTCTCCTTTCAACAATATGCTTGGTGACTGAAGGTCAGCAATGTCGTCCAAGTGGTAAGATTAGAGGAAGGAAGGCCCCTGCTGGACAATGCAACAAGGAGAATGACTCTGACTGCTGCGTTGCCGGCAAAATGTACCCGACCTACAAATGTTCACCGCCATTGTCCGGGAGCACCAAGGCCTACCTAACTCTCAACAGTTTTGAGAAAAATGGAGACGGAGGTGGTCCATCAGAATGTGACAACCAATACCACAATGACAACACACCGGTTGTGGCATTGTCCACTGGATGGTACAACAATGGACGAAGGTGCCATAACCACATCAGAATTAATGGTAACGGGCGCAGTGTGGTGGCCATGGTGGTAGATGAGTGTGACTCTACCGAGGGATGTGATGCAGACCATGACTACCAACCTCCTTGTCCTAACAACATTGTTGATGCTTCAAAGGCTGTCTGGAAAGCCTTGGGTGTGCCTGAGGACAACTGGGGTGGCTTAGATATCACATGGTCCGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.44

Weight (kDa)

5.77

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 360
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 185, 344
AfiI CCNNNNNNNGG 2 cut(s) 215, 339
AgeI ACCGGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 60, 498
AhdI GACNNNNNGTC 1 cut(s) 81
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 2 cut(s) 11, 224
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 24, 37
AoxI GGCC 3 cut(s) 123, 228, 405
ApeKI GCWGC 1 cut(s) 165
AseI ATTAAT 1 cut(s) 381
AsiGI ACCGGT 1 cut(s) 316
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 124, 275, 561
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 85, 195
AvaII GGWCC 2 cut(s) 275, 561
AxyI CCTNAGG 1 cut(s) 528
BalI TGGCCA 1 cut(s) 407
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 11, 224
BbvI GCAGC 1 cut(s) 152
BccI CCATC 2 cut(s) 286, 333
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 258
BisI GCNGC 1 cut(s) 166
BlpI GCTNAGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 2 cut(s) 275, 561
BmeRI GACNNNNNGTC 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 124, 275, 561
BmiI GGNNCC 3 cut(s) 31, 126, 362
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 2 cut(s) 436, 481
BmuI ACTGGG 1 cut(s) 547
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 413, 445
Bpu1102I GCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 225, 408, 435, 516
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 339
Bse118I RCCGGY 2 cut(s) 173, 316
Bse1I ACTGG 2 cut(s) 340, 542
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 2 cut(s) 33, 95
BseDI CCNNGG 4 cut(s) 225, 408, 435, 516
BseGI GGATG 2 cut(s) 344, 446
BseLI CCNNNNNNNGG 2 cut(s) 215, 339
BseMI GCAATG 2 cut(s) 33, 95
BseMII CTCAG 2 cut(s) 24, 519
BseNI ACTGG 2 cut(s) 340, 542
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 3 cut(s) 125, 230, 407
BshNI GGYRCC 1 cut(s) 360
BshTI ACCGGT 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 11, 224
BsiSI CCGG 3 cut(s) 174, 216, 317
BslI CCNNNNNNNGG 2 cut(s) 215, 339
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
BsnI GGCC 3 cut(s) 125, 230, 407
Bsp1286I GDGCHC 2 cut(s) 11, 224
Bsp143I GATC 1 cut(s) 29
Bsp1720I GCTNAGC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 1 cut(s) 206
BspANI GGCC 3 cut(s) 125, 230, 407
BspCNI CTCAG 2 cut(s) 23, 520
BspLI GGNNCC 3 cut(s) 31, 126, 362
BspPI GGATC 2 cut(s) 24, 37
BspT107I GGYRCC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 33, 95
BsrFI RCCGGY 2 cut(s) 173, 316
BsrI ACTGG 2 cut(s) 340, 542
BssAI RCCGGY 2 cut(s) 173, 316
BssECI CCNNGG 4 cut(s) 225, 408, 435, 516
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 3 cut(s) 225, 408, 516
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 4 cut(s) 10, 528, 547, 570
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 344, 446
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 174, 500
BstSCI CCNGG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 3 cut(s) 125, 230, 407
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 344, 446
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 333, 403
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 2 cut(s) 173, 316
Cfr13I GGNCC 3 cut(s) 124, 275, 561
Csp6I GTAC 2 cut(s) 184, 343
CspAI ACCGGT 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 3 cut(s) 409, 455, 558
CviJI RGCY 7 cut(s) 9, 125, 230, 407, 503, 515, 546
CviKI_1 RGCY 7 cut(s) 9, 125, 230, 407, 503, 515, 546
CviQI GTAC 2 cut(s) 184, 343
DdeI CTNAG 4 cut(s) 10, 528, 547, 570
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DriI GACNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 405
Eam1105I GACNNNNNGTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 3 cut(s) 225, 408, 516
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 275, 561
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 124
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 3 cut(s) 225, 408, 516
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 3 cut(s) 225, 408, 516
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 3 cut(s) 412, 458, 561
FaiI YATR 5 cut(s) 67, 366, 410, 456, 559
FatI CATG 3 cut(s) 408, 454, 557
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 2 cut(s) 351, 453
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 3 cut(s) 125, 230, 407
HapII CCGG 3 cut(s) 174, 216, 317
HhaI GCGC 1 cut(s) 396
Hin1II CATG 3 cut(s) 412, 458, 561
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 2 cut(s) 155, 428
HpaII CCGG 3 cut(s) 174, 216, 317
HphI GGTGA 2 cut(s) 85, 195
Hpy166II GTNNAC 2 cut(s) 203, 333
Hpy188I TCNGA 4 cut(s) 160, 283, 377, 565
Hpy188III TCNNGA 2 cut(s) 24, 508
Hpy8I GTNNAC 2 cut(s) 203, 333
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 74, 111, 115, 351
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 141, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 500
HpyF3I CTNAG 4 cut(s) 10, 528, 547, 570
Hsp92II CATG 3 cut(s) 412, 458, 561
HspAI GCGC 1 cut(s) 394
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 117, 141, 187, 229, 321, 330, 493, 523, 540
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 2 cut(s) 436, 481
MaeIII GTNAC 4 cut(s) 73, 287, 386, 425
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 11, 224
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 2 cut(s) 15, 378
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 2 cut(s) 149, 422
MnlI CCTC 6 cut(s) 20, 107, 263, 430, 477, 523
Mox20I TGGCCA 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 407
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 283
Msp20I TGGCCA 1 cut(s) 407
MspI CCGG 3 cut(s) 174, 216, 317
MspR9I CCNGG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 174, 500
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 408
NdeII GATC 1 cut(s) 29
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 412, 458, 561
NlaIV GGNNCC 3 cut(s) 31, 126, 362
NmuCI GTSAC 3 cut(s) 73, 287, 425
PceI AGGCCT 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 2 cut(s) 149, 422
PpsI GAGTC 2 cut(s) 149, 422
PshBI ATTAAT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 31, 126, 362
PspPI GGNCC 3 cut(s) 124, 275, 561
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 2 cut(s) 185, 344
RsaNI GTAC 2 cut(s) 184, 343
RseI CAYNNNNRTG 1 cut(s) 283
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 3 cut(s) 124, 275, 561
SchI GAGTC 2 cut(s) 149, 422
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 2 cut(s) 11, 224
SetI ASST 7 cut(s) 11, 85, 194, 237, 274, 362, 469
SfaNI GCATC 2 cut(s) 436, 481
SinI GGWCC 2 cut(s) 275, 561
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 2 cut(s) 15, 378
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 1 cut(s) 206
SstI GAGCTC 1 cut(s) 11
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 3 cut(s) 225, 408, 516
TaaI ACNGT 1 cut(s) 248
TasI AATT 2 cut(s) 15, 378
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 340, 403
TseFI GTSAC 3 cut(s) 73, 287, 425
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 3 cut(s) 73, 287, 425
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 2 cut(s) 340, 403
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 275, 561
VspI ATTAAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.