Rmu_sc0001211.1_g000118

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001211.1
OG0000242
Physical Location & Seq
Forward (+)
470518 .. 470883
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001211.1_g000118.1.cds

Sequence Viewer

Length: 366 bp
atgaagtccaagcgtacaaaagcaaccttgacaatcaacagcttcgagaaaggtggtgatggtggtggaccgtctggatgtgacaataaattccactcggataacaccacggtcgtggcattgtccaccgggtggttcaacaataggaagaggtgttcacactacatcaccatacatggtaatggaagaactgtgaaagccaaggttgttgatgagtgtgactccacaatgggttgtgatcctgttcatgattaccagcctccatgccgtcacaacatagttgatgcctctccagctgtttggaaggccttgggagttaaggaaagcgactggggtgaaatgcagatattctggtctgatgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.3

Weight (kDa)

7.67

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 132
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 2 cut(s) 42, 296
AluI AGCT 2 cut(s) 42, 296
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 68, 160, 347
AvaII GGWCC 1 cut(s) 68
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 274, 349
BmuI ACTGGG 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 3 cut(s) 108, 201, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 108, 201, 309
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 308
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 108, 201, 309
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 2 cut(s) 201, 309
Bst4CI ACNGT 3 cut(s) 72, 112, 193
Bst6I CTCTTC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 128
BstXI CCANNNNNNTGG 2 cut(s) 115, 300
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 83
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 176, 248, 264
CviJI RGCY 5 cut(s) 42, 200, 259, 296, 308
CviKI_1 RGCY 5 cut(s) 42, 200, 259, 296, 308
CviQI GTAC 1 cut(s) 15
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 201, 309
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 68
EcoT14I CCWWGG 2 cut(s) 201, 309
ErhI CCWWGG 2 cut(s) 201, 309
FaeI CATG 3 cut(s) 179, 251, 267
FaiI YATR 5 cut(s) 173, 177, 249, 265, 278
FatI CATG 3 cut(s) 175, 247, 263
FokI GGATG 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 129
Hin1II CATG 3 cut(s) 179, 251, 267
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 68, 160, 347
Hpy166II GTNNAC 3 cut(s) 68, 126, 158
Hpy188I TCNGA 2 cut(s) 100, 358
Hpy188III TCNNGA 3 cut(s) 46, 75, 248
Hpy8I GTNNAC 3 cut(s) 68, 126, 158
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 72, 112, 193
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 179, 251, 267
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 60, 142, 255, 269, 306, 316, 337
LweI GCATC 2 cut(s) 274, 349
MaeIII GTNAC 3 cut(s) 80, 218, 269
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 160, 198
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 144, 270, 298
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 113, 180
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 179, 251, 267
NmuCI GTSAC 3 cut(s) 80, 218, 269
OliI CACNNNNGTG 1 cut(s) 113
PagI TCATGA 1 cut(s) 247
PceI AGGCCT 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 132
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 2 cut(s) 113, 180
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 130
SetI ASST 6 cut(s) 29, 44, 55, 155, 207, 298
SfaNI GCATC 2 cut(s) 274, 349
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 113, 180
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 308
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 2 cut(s) 201, 309
TaaI ACNGT 3 cut(s) 72, 112, 193
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 89
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 3 cut(s) 80, 218, 269
Tsp45I GTSAC 3 cut(s) 80, 218, 269
TspDTI ATGAA 2 cut(s) 17, 236
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.