MD01G1055800.v1.1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000242
Physical Location & Seq
Forward (+)
16097302 .. 16097725
424 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1055800.v1.1.491

Sequence Viewer

Length: 387 bp
ATGAAGAACTTAGCAATTTTCTCAAATGGTTCACTTGTCCTTCAAATCATTCTCCTTTCAACAATTTGCTTGGTCACTGAAGCTAAGCAATGTCGTCCAAGCAGCAGAATTAGAGGAAGGAAGCCCCCTCCTGGACAATGCAACCAGGAGAATGACTCTGACTGTTTTATAGGAGGCAAAATGTACCCAACATATACATGTTCACCACCATTGTCCGGGAGCACCAAGGCCTACCTCACTCTTAACAGTTTTGAGAAAGGTGGAGATGGCGGCGGTCCATCAGAATGTGACAACAAATACCACAATGACAGCATCCCTGTTGTGGCATTGTCCACTGAATGGTATAACAATGGAGGAAGATGCCTCAACAACATCCATAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.9

Weight (kDa)

8.43

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 29 - 125 1.4e-33 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 2 cut(s) 270, 273
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 131, 215, 322, 339
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 44, 60
AjnI CCWGG 2 cut(s) 130, 144
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 260, 286
BciT130I CCWGG 2 cut(s) 132, 146
BcnI CCSGG 1 cut(s) 217
BisI GCNGC 2 cut(s) 103, 271
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 2 cut(s) 104, 272
Bme1390I CCNGG 3 cut(s) 132, 146, 217
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 132, 146, 217
BmsI GCATC 2 cut(s) 321, 350
BplI GAGNNNNNCTC 2 cut(s) 140, 172
Bpu1102I GCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 215, 322, 339
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 132, 146
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 312, 372
BseLI CCNNNNNNNGG 4 cut(s) 131, 215, 322, 339
BseMI GCAATG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 131, 215, 322, 339
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 2 cut(s) 270, 273
BspANI GGCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 132, 146
Bst4CI ACNGT 2 cut(s) 164, 248
BstDEI CTNAG 2 cut(s) 10, 84
BstF5I GGATG 2 cut(s) 312, 372
BstNI CCWGG 2 cut(s) 132, 146
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 130, 144, 215
BstV1I GCAGC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 312, 372
BtsIMutI CAGTG 2 cut(s) 75, 333
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 198
CviJI RGCY 3 cut(s) 83, 124, 230
CviKI_1 RGCY 3 cut(s) 83, 124, 230
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 10, 84
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 130, 144
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 170, 193, 195, 199, 345, 378
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 103, 271
FokI GGATG 2 cut(s) 299, 359
Fsp4HI GCNGC 2 cut(s) 103, 271
GluI GCNGC 2 cut(s) 103, 271
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 216
Hin1II CATG 1 cut(s) 201
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 3 cut(s) 32, 203, 333
Hpy188I TCNGA 2 cut(s) 160, 283
Hpy8I GTNNAC 3 cut(s) 32, 203, 333
HpyAV CCTTC 2 cut(s) 50, 111
HpyCH4III ACNGT 2 cut(s) 164, 248
HpyCH4V TGCA 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 10, 84
Hsp92II CATG 1 cut(s) 201
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 117, 131, 144, 158, 229, 330
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 2 cut(s) 321, 350
MaeIII GTNAC 2 cut(s) 73, 287
MboII GAAGA 2 cut(s) 16, 369
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 3 cut(s) 15, 63, 108
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 6 cut(s) 107, 138, 167, 245, 347, 374
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 196, 283
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 132, 146, 217
MvaI CCWGG 2 cut(s) 132, 146
NciI CCSGG 1 cut(s) 217
NlaIII CATG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 73, 287
NspI RCATGY 1 cut(s) 201
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 2 cut(s) 130, 215
PkrI GCNGC 2 cut(s) 104, 272
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PscI ACATGT 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 130, 144
PspGI CCWGG 2 cut(s) 130, 144
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 196, 283
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 2 cut(s) 103, 271
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 132, 146, 217
SduI GDGCHC 1 cut(s) 224
SetI ASST 3 cut(s) 85, 237, 262
SfaNI GCATC 2 cut(s) 321, 350
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 196, 283
Sse9I AATT 3 cut(s) 15, 63, 108
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 2 cut(s) 270, 273
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 130, 144, 215
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 164, 248
TasI AATT 3 cut(s) 15, 63, 108
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 82, 340
TseFI GTSAC 2 cut(s) 73, 287
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 2 cut(s) 73, 287
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 82, 340
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 275
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.