Rroxscaffold_4G00307030

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000242
Physical Location & Seq
Reverse (-)
28118762 .. 28118977
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307030.1

Sequence Viewer

Length: 216 bp
ATGTGTCTAAAGAACATCAAGATTAGCGGTAATGGGCGCAGTGTGGTGGCCTTGGTGGTGGATGAGTGTGACTCAACTATGGGATGTGACGTGGACAATGACTTCCTGCCTCCTTGTGCTAATAATGTTGTTGATGCCTCGAAGGCTGTCTGGGAAGCATTAGGTGTGCCTCATGGCGATTGGGATGGTTTATACATTACCTGGTCGAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.6

Weight (kDa)

4.16

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 70 8e-22 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 200
AoxI GGCC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 39
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BsaJI CCNNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 67, 89, 190
BshFI GGCC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 50
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 67, 89, 190
BstHHI GCGC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 3 cut(s) 67, 89, 190
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 173
CviJI RGCY 2 cut(s) 50, 146
CviKI_1 RGCY 2 cut(s) 50, 146
DdeI CTNAG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 80, 174, 193
FatI CATG 1 cut(s) 172
FokI GGATG 3 cut(s) 74, 96, 197
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 119, 136, 187
LweI GCATC 1 cut(s) 124
MabI ACCWGGT 1 cut(s) 200
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 68, 86
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 3 cut(s) 120, 148, 180
MspR9I CCNGG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 68, 86
PctI GAATGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 202
SetI ASST 3 cut(s) 93, 166, 203
SexAI ACCWGGT 1 cut(s) 200
SfaNI GCATC 1 cut(s) 124
SgeI CNNG 8 cut(s) 31, 64, 103, 118, 126, 151, 163, 185
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 51
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 140, 206
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 68, 86
Tsp45I GTSAC 2 cut(s) 68, 86
TspRI CASTG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.