RchiOBHm_Chr1g0334061

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000242
Physical Location & Seq
Forward (+)
26139234 .. 26139665
432 bp
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UTR
Exon/CDS
Intron
PRQ56282

Sequence Viewer

Length: 432 bp
ATGTACCCAACCTACACTTGCTCACCACCAATGTCCGGTAACACCAAGGCATACCTCACTCTCAATAGCTTTGAGGCAGGTGGTGAAGGAGGAGGCCCATCTGAATGTGACGGTAAGTATCACAATAACAACACTCCAGTTGTTGCATTATCCACAGGATGGTACAACGGTGGATCAAGGTGCCTCAACAACATCAGAATTAATGGTAACGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGCGACTCTATTGAGGTATGTGATGCAGACCATGATTATCAGCCTCCTTATCCCAAAAACATTGTTGATGCCTCCAAGGCCGTCTGGAAAGCCATAGGTGTATCTGAGGACAACTGGGGTGGATTGGATATCACATGGCCTGGTCCGACTGAAAACACTAAATGGAATAAAATAGATAGTTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

4.6

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 127 1.8e-46 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 159
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 225
AfaI GTAC 2 cut(s) 5, 164
AfiI CCNNNNNNNGG 2 cut(s) 35, 159
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AlwI GGATC 1 cut(s) 181
AoxI GGCC 4 cut(s) 94, 225, 321, 380
AseI ATTAAT 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 95, 386
AsuHPI GGTGA 2 cut(s) 15, 95
AvaII GGWCC 1 cut(s) 386
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 180
BccI CCATC 2 cut(s) 106, 153
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 95, 386
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 256, 301
BmuI ACTGGG 1 cut(s) 367
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 45, 228, 318
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 159
Bse1I ACTGG 2 cut(s) 137, 362
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 45, 228, 318
BseGI GGATG 2 cut(s) 164, 244
BseLI CCNNNNNNNGG 2 cut(s) 35, 159
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 137, 362
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 4 cut(s) 96, 227, 323, 382
BshNI GGYRCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 35, 159
BsnI GGCC 4 cut(s) 96, 227, 323, 382
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 4 cut(s) 96, 227, 323, 382
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 137, 362
BssECI CCNNGG 3 cut(s) 45, 228, 318
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 3 cut(s) 45, 228, 318
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 113, 170
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 164, 244
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 4 cut(s) 96, 227, 323, 382
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 164, 244
BveI ACCTGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 95, 386
Csp6I GTAC 2 cut(s) 4, 163
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 3 cut(s) 229, 275, 378
CviJI RGCY 7 cut(s) 69, 96, 227, 286, 323, 335, 382
CviKI_1 RGCY 7 cut(s) 69, 96, 227, 286, 323, 335, 382
CviQI GTAC 2 cut(s) 4, 163
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 225
Eco130I CCWWGG 3 cut(s) 45, 228, 318
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 382
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 45, 228, 318
ErhI CCWWGG 3 cut(s) 45, 228, 318
FaeI CATG 3 cut(s) 232, 278, 381
FaiI YATR 7 cut(s) 52, 230, 262, 276, 338, 379, 426
FatI CATG 3 cut(s) 228, 274, 377
FokI GGATG 2 cut(s) 171, 251
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 4 cut(s) 96, 227, 323, 382
HapII CCGG 1 cut(s) 36
Hin1II CATG 3 cut(s) 232, 278, 381
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 36
HphI GGTGA 2 cut(s) 15, 95
Hpy188I TCNGA 4 cut(s) 103, 197, 349, 390
Hpy188III TCNNGA 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 113, 170
HpyCH4V TGCA 2 cut(s) 146, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 3 cut(s) 232, 278, 381
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 8 cut(s) 49, 63, 141, 150, 313, 343, 369, 396
LweI GCATC 2 cut(s) 256, 301
MaeIII GTNAC 3 cut(s) 38, 107, 206
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 9 cut(s) 65, 67, 83, 86, 194, 250, 297, 325, 343
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 103, 233
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 173
NlaIII CATG 3 cut(s) 232, 278, 381
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PflMI CCANNNNNTGG 1 cut(s) 159
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 95, 386
RsaI GTAC 2 cut(s) 5, 164
RsaNI GTAC 2 cut(s) 4, 163
RseI CAYNNNNRTG 2 cut(s) 103, 233
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 2 cut(s) 95, 386
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 384
SetI ASST 7 cut(s) 14, 57, 71, 82, 182, 261, 343
SfaNI GCATC 2 cut(s) 256, 301
SinI GGWCC 1 cut(s) 386
SmiMI CAYNNNNRTG 2 cut(s) 103, 233
Sse9I AATT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 3 cut(s) 45, 228, 318
TaaI ACNGT 2 cut(s) 113, 170
TasI AATT 1 cut(s) 198
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 386
VspI ATTAAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.