Rorug05G0135300

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000242
Physical Location & Seq
Forward (+)
12206333 .. 12208585
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0135300.1

Sequence Viewer

Length: 1323 bp
ATGGATTCAGAAGAAAAAAATCATGCCACTGAAGATGACTTGCCATCTGACGAGAAGAAGAGAAGAGGTCCAACTCTCATGTCTGATATTATTCATGGTAGGTGTAAGGGGGCTCGAATGGAAGTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGAGGCTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCAGTGAAGAATTCACTTAAAGAAATGATATGGAGCATGGTTCAGGAAATTCATGAGGACCACTCAAAGAGACTAGCTTTGCATGAGTATGATCATCGAATGTCTAGGAAAGGCTATGCTAATTTGGAAGAGAAACTAAAAATGGAGTTAGGGACTGAAGACGATATTGATAGAGCCATCTTATGGAAGAAAGGGCGTGTCTATAAAGATGGTAACTATTTGAGTGAGACAACCAAACAACGTGTTGAGAAAATTGATGCTTTAACGAAAGATGTGAGGGAGGGAATTGTGTCCGCTGTTAGTAGAAACGACATTTTGACTCAAGCTTTGGAGACACCTGAGCAATCGGGCAGTGTAAGAGGTGCTGGACAATTTGTTACACATAAGGTGTACTTTAATACATCTAGATATAAGCCTGCAACCAAGACACAATTGTTGGAACAGCAGTTGGAATTGATAAAAAACCAGATCAACATGTTTACTTTATTATTGGATCCCGAGAAGTTGGATCCAGTTAAACTAAACATGATGCGAGACATGTTCAGATCTAATAATGGATCTGAAAAAGCTAGTTGCTCCGTCGACAAGGAGAAAAATAAGTCTTCTAAGGAGGAGGTATCTAAGGTGGCATCGGAGAAAGAAAATGAGAAAAAAGCTACTGCCAAAAAGGTTCAAAAAATGGATGATACTCCACCTCCAATTGACAGCAGTAGAGAGAGCAAGAAGGCAAAACAATTGTATAAAGGGGGACTGATGATGAGGCAGAGAGGAGCATTGGAAGATGACAATGTGATAACTTCAACAGAGAAAGCATATATTCCTATTGAGACAACAAATGTTGTAAAAAAGGGGAAAAAATGCAAGCTAGTAGTAGACACCAAAGATAACATTGTTGCAATGGGAACTGTAATAATGTTGGATGGGCCGATACATGGAGTGCCACTAGGAGCAGAAAATATACGTATCTCAGTTGATGTGCCCATCAAGGAAGATGCTAAACTCCCCATCCCAAATGTGTCAGCTGAAATTTTTACAGTAAAGCAAGCTACCGATTTAGAACTCAATGAGCACTTGGAAGTATTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

49.67

Weight (kDa)

8.58

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 95 - 206 2.5e-07 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 359 - 428 1.4e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 417
AccI GTMKAC 2 cut(s) 816, 1107
AciI CCGC 1 cut(s) 528
AclWI GGATC 5 cut(s) 722, 735, 737, 750, 799
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 3 cut(s) 244, 282, 1260
AcuI CTGAAG 2 cut(s) 51, 411
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 417, 1166
AflIII ACRYGT 3 cut(s) 475, 708, 771
AgsI TTSAA 2 cut(s) 908, 1035
AluBI AGCT 8 cut(s) 176, 311, 560, 803, 890, 1099, 1256, 1280
AluI AGCT 8 cut(s) 176, 311, 560, 803, 890, 1099, 1256, 1280
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 6 cut(s) 218, 298, 455, 560, 762, 1055
AlwI GGATC 5 cut(s) 722, 735, 737, 750, 799
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 2 cut(s) 230, 1157
ApoI RAATTY 3 cut(s) 244, 282, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
AspS9I GGNCC 3 cut(s) 68, 292, 1157
AsuNHI GCTAGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 2 cut(s) 68, 292
BaeGI GKGCMC 1 cut(s) 1215
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 2 cut(s) 727, 742
BanII GRGCYC 1 cut(s) 115
BbsI GAAGAC 2 cut(s) 399, 828
Bbv12I GWGCWC 1 cut(s) 1305
BccI CCATC 6 cut(s) 52, 419, 437, 1148, 1223, 1247
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 6 cut(s) 218, 298, 455, 560, 762, 1055
BfaI CTAG 7 cut(s) 173, 308, 339, 639, 804, 1100, 1178
BglII AGATCT 1 cut(s) 779
Bme18I GGWCC 2 cut(s) 68, 292
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 3 cut(s) 68, 292, 1157
BmiI GGNNCC 2 cut(s) 729, 744
BmsI GCATC 4 cut(s) 481, 753, 872, 1216
BmtI GCTAGC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 399, 828
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu10I CCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 1196
BsaXI ACNNNNNCTCC 2 cut(s) 913, 943
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 1166
Bse1I ACTGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 1137
BseGI GGATG 3 cut(s) 922, 1159, 1239
BseLI CCNNNNNNNGG 2 cut(s) 417, 1166
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 2 cut(s) 564, 1215
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 2 cut(s) 860, 1017
BseSI GKGCMC 1 cut(s) 1215
BshFI GGCC 2 cut(s) 232, 1159
BsiHKAI GWGCWC 1 cut(s) 1305
BsiHKCI CYCGRG 1 cut(s) 731
BslFI GGGAC 2 cut(s) 400, 996
BslI CCNNNNNNNGG 2 cut(s) 417, 1166
BsmAI GTCTC 6 cut(s) 218, 298, 455, 560, 762, 1055
BsmFI GGGAC 2 cut(s) 400, 996
BsnI GGCC 2 cut(s) 232, 1159
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 3 cut(s) 115, 1215, 1305
Bsp143I GATC 6 cut(s) 325, 702, 727, 742, 779, 791
BspACI CCGC 1 cut(s) 528
BspANI GGCC 2 cut(s) 232, 1159
BspCNI CTCAG 2 cut(s) 565, 1214
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 729, 744
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 5 cut(s) 722, 735, 737, 750, 799
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 1 cut(s) 746
BssMI GATC 6 cut(s) 325, 702, 727, 742, 779, 791
Bst4CI ACNGT 2 cut(s) 1141, 1270
Bst6I CTCTTC 4 cut(s) 53, 58, 161, 357
BstBAI YACGTR 1 cut(s) 1196
BstC8I GCNNGC 5 cut(s) 174, 234, 651, 1097, 1278
BstDEI CTNAG 4 cut(s) 573, 840, 855, 1201
BstF5I GGATG 3 cut(s) 922, 1159, 1239
BstKTI GATC 6 cut(s) 328, 705, 730, 745, 782, 794
BstMAI GTCTC 6 cut(s) 218, 298, 455, 560, 762, 1055
BstMBI GATC 6 cut(s) 325, 702, 727, 742, 779, 791
BstNSI RCATGY 2 cut(s) 712, 775
BstSLI GKGCMC 1 cut(s) 1215
BstSNI TACGTA 1 cut(s) 1196
BstV2I GAAGAC 2 cut(s) 399, 828
BstX2I RGATCY 4 cut(s) 727, 742, 779, 791
BstYI RGATCY 4 cut(s) 727, 742, 779, 791
BsuRI GGCC 2 cut(s) 232, 1159
BtsCI GGATG 3 cut(s) 922, 1159, 1239
BtsI GCAGTG 2 cut(s) 243, 592
BtsIMutI CAGTG 3 cut(s) 27, 243, 592
Cac8I GCNNGC 5 cut(s) 174, 234, 651, 1097, 1278
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 68, 292, 1157
Csp6I GTAC 1 cut(s) 625
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 4 cut(s) 573, 840, 855, 1201
DpnI GATC 6 cut(s) 327, 704, 729, 744, 781, 793
DpnII GATC 6 cut(s) 325, 702, 727, 742, 779, 791
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 4 cut(s) 53, 58, 161, 357
EarI CTCTTC 4 cut(s) 53, 58, 161, 357
Eco105I TACGTA 1 cut(s) 1196
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 68, 292
Eco57I CTGAAG 2 cut(s) 51, 411
Eco88I CYCGRG 1 cut(s) 731
EcoRI GAATTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 115
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 2 cut(s) 400, 996
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 2 cut(s) 816, 1107
FokI GGATG 3 cut(s) 929, 1166, 1226
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 7 cut(s) 173, 308, 339, 639, 804, 1100, 1178
HaeIII GGCC 2 cut(s) 232, 1159
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 2 cut(s) 5, 553
Hpy166II GTNNAC 4 cut(s) 625, 714, 817, 1108
Hpy188I TCNGA 6 cut(s) 10, 49, 85, 779, 796, 868
Hpy188III TCNNGA 4 cut(s) 278, 287, 639, 731
Hpy8I GTNNAC 4 cut(s) 625, 714, 817, 1108
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 1 cut(s) 952
HpyCH4III ACNGT 2 cut(s) 1141, 1270
HpyCH4IV ACGT 2 cut(s) 475, 1195
HpyCH4V TGCA 4 cut(s) 316, 653, 1095, 1130
HpyF3I CTNAG 4 cut(s) 573, 840, 855, 1201
HpySE526I ACGT 2 cut(s) 475, 1195
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 6 cut(s) 325, 702, 727, 742, 779, 791
LmnI GCTCC 4 cut(s) 267, 815, 1004, 1181
LpnPI CCDG 7 cut(s) 246, 263, 585, 585, 663, 713, 759
LweI GCATC 4 cut(s) 481, 753, 872, 1216
MaeI CTAG 7 cut(s) 173, 308, 339, 639, 804, 1100, 1178
MaeII ACGT 2 cut(s) 475, 1195
MaeIII GTNAC 3 cut(s) 124, 446, 610
MalI GATC 6 cut(s) 327, 704, 729, 744, 781, 793
MboI GATC 6 cut(s) 325, 702, 727, 742, 779, 791
MfeI CAATTG 4 cut(s) 150, 665, 933, 968
MflI RGATCY 4 cut(s) 727, 742, 779, 791
MhlI GDGCHC 3 cut(s) 115, 1215, 1305
MlsI TGGCCA 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 547
MmeI TCCRAC 5 cut(s) 95, 651, 663, 720, 1131
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 4 cut(s) 252, 497, 630, 750
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 2 cut(s) 530, 1256
MunI CAATTG 4 cut(s) 150, 665, 933, 968
NdeI CATATG 1 cut(s) 220
NdeII GATC 6 cut(s) 325, 702, 727, 742, 779, 791
NheI GCTAGC 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 729, 744
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 712, 775
PagI TCATGA 1 cut(s) 286
PciI ACATGT 2 cut(s) 708, 771
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 417
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Ppu21I YACGTR 1 cut(s) 1196
PscI ACATGT 2 cut(s) 708, 771
PspN4I GGNNCC 2 cut(s) 729, 744
PspPI GGNCC 3 cut(s) 68, 292, 1157
PsuI RGATCY 4 cut(s) 727, 742, 779, 791
PvuII CAGCTG 1 cut(s) 1256
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 321
SalI GTCGAC 1 cut(s) 815
SaqAI TTAA 4 cut(s) 252, 497, 630, 750
Sau3AI GATC 6 cut(s) 325, 702, 727, 742, 779, 791
Sau96I GGNCC 3 cut(s) 68, 292, 1157
SchI GAGTC 1 cut(s) 547
SduI GDGCHC 3 cut(s) 115, 1215, 1305
SfaNI GCATC 4 cut(s) 481, 753, 872, 1216
SinI GGWCC 2 cut(s) 68, 292
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 1196
SsiI CCGC 1 cut(s) 528
SspMI CTAG 7 cut(s) 173, 308, 339, 639, 804, 1100, 1178
TaaI ACNGT 2 cut(s) 1141, 1270
TaiI ACGT 2 cut(s) 478, 1198
TaqI TCGA 5 cut(s) 115, 199, 331, 816, 1317
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 252, 497, 630, 750
Tru9I TTAA 4 cut(s) 252, 497, 630, 750
TscAI CASTG 3 cut(s) 34, 243, 592
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 83, 275
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 3 cut(s) 34, 243, 592
Van91I CCANNNNNTGG 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 68, 292
XapI RAATTY 3 cut(s) 244, 282, 1260
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 2 cut(s) 712, 775
XmiI GTMKAC 2 cut(s) 816, 1107
XspI CTAG 7 cut(s) 173, 308, 339, 639, 804, 1100, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.