FvH4_7g13950

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000242
Physical Location & Seq
Reverse (-)
12412408 .. 12412977
570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13950.t1

Sequence Viewer

Length: 570 bp
ATGAAGCTCCACTTTTGTTCTTCGGGTGCTTGTCTCTTCATCTCCATCATTCTTGTAGCAAACTGGTTGAGCATTGAAGCTCAAACCTGCAATCCAAGTGGAAAGATAGTCGGTAGAAAACCTCCTCCGAAAAAATGTAACCGCCATAACCAATCTGAATGCTGCAAAGAAGGCAAGCTCTACACCACTTTCAAGTGCTCGCCGCATGTTTCCAAGCGTACTAAAGCAATCCTGACGCTCAACAGCTTTGAGAAAGGTGCTGATGGTGGCGGAGCATCCGAATGTGACAATAAGTTCCACTCTGATAACACCTCGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGGTGTTTGCACTATATAACCATTTATGGTAATGGAAGGAGTGTGAAAGCCAAGGTTGTTGATGAGTGTGACTCAAAAAGAGGATGTGATGCTGAACATGATTTCCAGCCTCCGTGCCCTCACAATGTTGTAGATTCCTCTAAGGCTGTTTGGAAGGCTTTGGGAGTGAAAGAAAGTGCCTGGGGTGAAATGCAGATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.87

Weight (kDa)

8.91

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 27 - 189 2.5e-61 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 336
AciI CCGC 3 cut(s) 142, 203, 270
AdeI CACNNNGTG 1 cut(s) 336
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 3 cut(s) 77, 193, 343
AjnI CCWGG 1 cut(s) 533
AloI GAACNNNNNNTCC 2 cut(s) 441, 473
AluBI AGCT 4 cut(s) 7, 80, 178, 246
AluI AGCT 4 cut(s) 7, 80, 178, 246
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 53, 257
BciT130I CCWGG 1 cut(s) 535
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 2 cut(s) 163, 203
BlsI GCNGC 2 cut(s) 164, 204
Bme1390I CCNGG 2 cut(s) 334, 535
BmrFI CCNGG 2 cut(s) 334, 535
BmsI GCATC 3 cut(s) 284, 433, 553
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpuMI CCSGG 1 cut(s) 334
BsaJI CCNNGG 3 cut(s) 312, 405, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 3 cut(s) 312, 405, 534
BseGI GGATG 2 cut(s) 275, 443
BseLI CCNNNNNNNGG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 200, 473
BspACI CCGC 3 cut(s) 142, 203, 270
BspMI ACCTGC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 312, 405, 534
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 535
Bst6I CTCTTC 2 cut(s) 41, 347
BstC8I GCNNGC 2 cut(s) 176, 200
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 275, 443
BstMAI GTCTC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 332, 533
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 275, 443
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 176, 200
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 219
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 2 cut(s) 206, 452
CviJI RGCY 8 cut(s) 7, 80, 178, 246, 404, 463, 500, 512
CviKI_1 RGCY 8 cut(s) 7, 80, 178, 246, 404, 463, 500, 512
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 495
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 41, 347
EarI CTCTTC 2 cut(s) 41, 347
EciI GGCGGA 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 2 cut(s) 209, 455
FaiI YATR 6 cut(s) 147, 207, 369, 371, 381, 453
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 2 cut(s) 205, 451
Fnu4HI GCNGC 2 cut(s) 163, 203
FokI GGATG 2 cut(s) 262, 450
Fsp4HI GCNGC 2 cut(s) 163, 203
GluI GCNGC 2 cut(s) 163, 203
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 209, 455
HinfI GANTC 2 cut(s) 425, 488
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 5 cut(s) 129, 157, 280, 304, 562
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 164, 384, 502
HpyCH4V TGCA 4 cut(s) 90, 165, 364, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 2 cut(s) 209, 455
LmnI GCTCC 2 cut(s) 12, 272
LpnPI CCDG 8 cut(s) 49, 100, 245, 346, 473, 520, 541, 547
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 3 cut(s) 284, 433, 553
MaeIII GTNAC 3 cut(s) 137, 284, 422
MboII GAAGA 3 cut(s) 12, 28, 364
MhlI GDGCHC 2 cut(s) 200, 473
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 8 cut(s) 132, 135, 322, 348, 428, 474, 483, 502
MslI CAYNNNNRTG 1 cut(s) 280
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 334, 535
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 334
NlaIII CATG 2 cut(s) 209, 455
NmuCI GTSAC 2 cut(s) 284, 422
NspI RCATGY 1 cut(s) 209
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 2 cut(s) 164, 204
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 280
SatI GCNGC 2 cut(s) 163, 203
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 334, 535
SduI GDGCHC 2 cut(s) 200, 473
SfaNI GCATC 3 cut(s) 284, 433, 553
SmiMI CAYNNNNRTG 1 cut(s) 280
SsiI CCGC 3 cut(s) 142, 203, 270
StyD4I CCNGG 2 cut(s) 332, 533
StyI CCWWGG 1 cut(s) 405
TaqII GACCGA 1 cut(s) 304
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 488
TseFI GTSAC 2 cut(s) 284, 422
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 2 cut(s) 284, 422
TspDTI ATGAA 2 cut(s) 17, 28
TspGWI ACGGA 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 336
XceI RCATGY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.