Rh1DG251600

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000242
Physical Location & Seq
Reverse (-)
46514333 .. 46514908
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG251600.1

Sequence Viewer

Length: 576 bp
ATGAAATGCCACTTTTGTTCTTCAGGTGCTTTTCTTTTCATCTTCATCATTCTTGTAACAATCTGTTTAAGCATTGAAGCTCAAACCTGCAGCCCAAACGGCAAAGTAGTCGGTAAAAAGCCTCCTCCGGGACAATGTAACCCCGAGAACCAGTCTGAATGCTGCAAAAAAGGCAAGCTCTACACCACTTACAAGTGCTCGCCTCCGGTGTCCAAGCATACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAAGTGGTGATGGTGGTGGACCGTCCGAATGTGACAATAAATTCCACTCCGATAATACCCTGGTTGTGGCATTGTCCACTGGGTGGTTCAACAACAGGAAGAGGTGTTCACACTACATTACCATACATGGTAATGGAAGGAGTGTGAAAGCCAAGGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCCTGATCATGATTACCAGCCTCCATGCCCTCACAACATCGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGATAGCGACTGGGGTGAAATGCATATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.89

Weight (kDa)

7.03

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 27 - 191 1.2e-64 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 336
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 336
AfiI CCNNNNNNNGG 3 cut(s) 128, 319, 336
AgsI TTSAA 2 cut(s) 77, 343
AjnI CCWGG 1 cut(s) 312
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 4 cut(s) 80, 178, 246, 500
AluI AGCT 4 cut(s) 80, 178, 246, 500
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 90, 162
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 272, 557
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 102, 149
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 2 cut(s) 91, 163
BlsI GCNGC 2 cut(s) 92, 164
Bme1390I CCNGG 2 cut(s) 129, 314
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 2 cut(s) 129, 314
BmrI ACTGGG 2 cut(s) 342, 550
BmsI GCATC 2 cut(s) 478, 559
BmuI ACTGGG 2 cut(s) 342, 550
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 312, 405, 513
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 319, 336
Bse1I ACTGG 3 cut(s) 151, 337, 545
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 312, 405, 513
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 128, 319, 336
BseNI ACTGG 3 cut(s) 151, 337, 545
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 102, 149
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 128, 206
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 128, 319, 336
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 237, 442, 448
BspANI GGCC 1 cut(s) 512
BspHI TCATGA 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 3 cut(s) 151, 337, 545
BssECI CCNNGG 3 cut(s) 312, 405, 513
BssMI GATC 3 cut(s) 237, 442, 448
BssT1I CCWWGG 2 cut(s) 405, 513
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 176, 200
BstKTI GATC 3 cut(s) 240, 445, 451
BstMBI GATC 3 cut(s) 237, 442, 448
BstMWI GCNNNNNNNGC 3 cut(s) 99, 171, 497
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 127, 312
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 102, 149
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 176, 200
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 3 cut(s) 380, 452, 468
CviJI RGCY 9 cut(s) 80, 93, 121, 178, 246, 404, 463, 500, 512
CviKI_1 RGCY 9 cut(s) 80, 93, 121, 178, 246, 404, 463, 500, 512
DpnI GATC 3 cut(s) 239, 444, 450
DpnII GATC 3 cut(s) 237, 442, 448
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco130I CCWWGG 2 cut(s) 405, 513
Eco147I AGGCCT 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 405, 513
EcoT22I ATGCAT 1 cut(s) 555
ErhI CCWWGG 2 cut(s) 405, 513
FaeI CATG 3 cut(s) 383, 455, 471
FaiI YATR 7 cut(s) 219, 377, 381, 453, 469, 555, 557
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 379, 451, 467
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 91, 163
Fsp4HI GCNGC 2 cut(s) 91, 163
GluI GCNGC 2 cut(s) 91, 163
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 512
HapII CCGG 2 cut(s) 128, 206
Hin1II CATG 3 cut(s) 383, 455, 471
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 128, 206
HphI GGTGA 2 cut(s) 272, 557
Hpy166II GTNNAC 3 cut(s) 272, 330, 362
Hpy188I TCNGA 4 cut(s) 157, 280, 304, 568
Hpy188III TCNNGA 3 cut(s) 250, 446, 452
Hpy8I GTNNAC 3 cut(s) 272, 330, 362
HpyAV CCTTC 2 cut(s) 384, 502
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 90, 165, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 171, 497
Hsp92II CATG 3 cut(s) 383, 455, 471
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 237, 442, 448
Lsp1109I GCAGC 2 cut(s) 102, 149
LweI GCATC 2 cut(s) 478, 559
MaeIII GTNAC 4 cut(s) 55, 137, 284, 422
MalI GATC 3 cut(s) 239, 444, 450
MboI GATC 3 cut(s) 237, 442, 448
MboII GAAGA 3 cut(s) 12, 34, 364
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 7 cut(s) 132, 135, 213, 348, 474, 483, 502
Mph1103I ATGCAT 1 cut(s) 555
MseI TTAA 2 cut(s) 68, 522
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 2 cut(s) 128, 206
MspR9I CCNGG 2 cut(s) 129, 314
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 99, 171, 497
NciI CCSGG 1 cut(s) 129
NdeII GATC 3 cut(s) 237, 442, 448
NlaIII CATG 3 cut(s) 383, 455, 471
NmuCI GTSAC 2 cut(s) 284, 422
NsiI ATGCAT 1 cut(s) 555
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 512
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 92, 164
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 68, 522
SatI GCNGC 2 cut(s) 91, 163
Sau3AI GATC 3 cut(s) 237, 442, 448
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 129, 314
SduI GDGCHC 1 cut(s) 200
SetI ASST 9 cut(s) 28, 82, 89, 180, 233, 248, 359, 411, 502
SfaNI GCATC 2 cut(s) 478, 559
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 512
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 127, 312
StyI CCWWGG 2 cut(s) 405, 513
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 293
Tru1I TTAA 2 cut(s) 68, 522
Tru9I TTAA 2 cut(s) 68, 522
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 2 cut(s) 284, 422
TseI GCWGC 2 cut(s) 90, 162
Tsp45I GTSAC 2 cut(s) 284, 422
TspDTI ATGAA 3 cut(s) 17, 28, 34
TspRI CASTG 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.