RLG00000029045

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
31942132 .. 31944700
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029045

Sequence Viewer

Length: 621 bp
ATGAATTTAGCAAATGGTATCGGGGTTGCATCAGTTGCACCTTGCAAAGTTGCTCCAGTATGCTGCACTTGCAAAGGTGCCTTTCTCTTCATCTTTATCATTCTTGTAACGATCTGTTTAACCATTGAAGCTCAAACCTGCAATCCAAGTGGCAAAATAGTGGGTAAAAGGCCTCCTCCGAAACAATGTAACCCTGAGAACCACTCTGAATGCTGCAAAAAAGGCATGCTCTACACCACTTACAAGTGCTCACCTCCGGTGTCTAAGCGTACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAGGTGGTGATGGTGGTGGACCGTCTGAATGTGATAATAAATTCCACTCGGATAACACCGCGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAAGAAGAGGTGTTCACACTACATTACCATACATGGTAATGGAAGGACTGTGAAAGCCAAGGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCCTGTTCATGATTACCAGCCTCCATGCCCTCACAACATAGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGACTGGGGTGAAATGCAGATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.24

Weight (kDa)

8.33

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 44 - 206 1.3e-64 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 387
AccII CGCG 1 cut(s) 365
AciI CCGC 2 cut(s) 363, 365
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 2 cut(s) 4, 344
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 2 cut(s) 128, 394
AluBI AGCT 3 cut(s) 131, 297, 551
AluI AGCT 3 cut(s) 131, 297, 551
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 1 cut(s) 488
AoxI GGCC 2 cut(s) 170, 561
ApeKI GCWGC 2 cut(s) 63, 213
ApoI RAATTY 2 cut(s) 4, 344
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 243, 323, 602
AvaII GGWCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 50, 200
BccI CCATC 1 cut(s) 308
BcnI CCSGG 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 2 cut(s) 64, 214
BlsI GCNGC 2 cut(s) 65, 215
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 385
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 3 cut(s) 38, 529, 604
BmuI ACTGGG 1 cut(s) 595
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 461, 493
BpmI CTGGAG 2 cut(s) 39, 531
BpuMI CCSGG 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 363, 456, 564
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 2 cut(s) 56, 590
BseDI CCNNGG 3 cut(s) 363, 456, 564
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 56, 590
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 50, 200
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 172, 563
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 257, 384
BslI CCNNNNNNNGG 1 cut(s) 387
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 172, 563
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 111, 288, 493
BspACI CCGC 2 cut(s) 363, 365
BspANI GGCC 2 cut(s) 172, 563
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 56, 590
BssECI CCNNGG 3 cut(s) 363, 456, 564
BssMI GATC 3 cut(s) 111, 288, 493
BssT1I CCWWGG 2 cut(s) 456, 564
Bst4CI ACNGT 2 cut(s) 327, 448
Bst6I CTCTTC 2 cut(s) 92, 398
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 195, 264
BstDSI CCRYGG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 3 cut(s) 114, 291, 496
BstMBI GATC 3 cut(s) 111, 288, 493
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 5 cut(s) 35, 69, 222, 371, 548
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 383
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 50, 200
BstXI CCANNNNNNTGG 1 cut(s) 555
BsuRI GGCC 2 cut(s) 172, 563
BtgI CCRYGG 1 cut(s) 363
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 323
Cfr42I CCGCGG 1 cut(s) 366
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 4 cut(s) 226, 431, 503, 519
CviJI RGCY 7 cut(s) 131, 172, 297, 455, 514, 551, 563
CviKI_1 RGCY 7 cut(s) 131, 172, 297, 455, 514, 551, 563
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 195, 264
DpnI GATC 3 cut(s) 113, 290, 495
DpnII GATC 3 cut(s) 111, 288, 493
DraIII CACNNNGTG 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 92, 398
EarI CTCTTC 2 cut(s) 92, 398
Eco130I CCWWGG 2 cut(s) 456, 564
Eco147I AGGCCT 2 cut(s) 172, 563
Eco47I GGWCC 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 456, 564
ErhI CCWWGG 2 cut(s) 456, 564
FaeI CATG 4 cut(s) 229, 434, 506, 522
FaiI YATR 7 cut(s) 61, 227, 428, 432, 504, 520, 533
FatI CATG 4 cut(s) 225, 430, 502, 518
Fnu4HI GCNGC 2 cut(s) 64, 214
Fsp4HI GCNGC 2 cut(s) 64, 214
GluI GCNGC 2 cut(s) 64, 214
GsuI CTGGAG 2 cut(s) 39, 531
HaeIII GGCC 2 cut(s) 172, 563
HapII CCGG 2 cut(s) 257, 384
Hin1II CATG 4 cut(s) 229, 434, 506, 522
HinfI GANTC 1 cut(s) 476
HpaII CCGG 2 cut(s) 257, 384
HphI GGTGA 3 cut(s) 243, 323, 602
Hpy166II GTNNAC 3 cut(s) 323, 381, 413
Hpy188I TCNGA 5 cut(s) 180, 208, 331, 355, 613
Hpy188III TCNNGA 2 cut(s) 301, 503
Hpy8I GTNNAC 3 cut(s) 323, 381, 413
HpyAV CCTTC 2 cut(s) 435, 553
HpyCH4III ACNGT 2 cut(s) 327, 448
HpyCH4V TGCA 8 cut(s) 29, 38, 45, 66, 72, 141, 216, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 69, 222, 371, 548
HpyF3I CTNAG 2 cut(s) 195, 264
Hsp92II CATG 4 cut(s) 229, 434, 506, 522
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 3 cut(s) 111, 288, 493
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 2 cut(s) 50, 200
LweI GCATC 3 cut(s) 38, 529, 604
MaeIII GTNAC 3 cut(s) 106, 188, 473
MalI GATC 3 cut(s) 113, 290, 495
MboI GATC 3 cut(s) 111, 288, 493
MboII GAAGA 2 cut(s) 79, 415
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 4, 344
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 7 cut(s) 183, 186, 264, 399, 525, 534, 553
MseI TTAA 2 cut(s) 119, 573
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 2 cut(s) 365, 551
MspI CCGG 2 cut(s) 257, 384
MspR9I CCNGG 1 cut(s) 385
Mva1269I GAATGC 1 cut(s) 215
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 35, 69, 222, 371, 548
NciI CCSGG 1 cut(s) 385
NdeII GATC 3 cut(s) 111, 288, 493
NlaIII CATG 4 cut(s) 229, 434, 506, 522
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 2 cut(s) 172, 563
PctI GAATGC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 2 cut(s) 65, 215
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 435
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 2 cut(s) 119, 573
SatI GCNGC 2 cut(s) 64, 214
Sau3AI GATC 3 cut(s) 111, 288, 493
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 3 cut(s) 38, 529, 604
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 435
SphI GCATGC 1 cut(s) 229
Sse9I AATT 2 cut(s) 4, 344
SseBI AGGCCT 2 cut(s) 172, 563
SsiI CCGC 2 cut(s) 363, 365
StuI AGGCCT 2 cut(s) 172, 563
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 2 cut(s) 456, 564
TaaI ACNGT 2 cut(s) 327, 448
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 4, 344
Tru1I TTAA 2 cut(s) 119, 573
Tru9I TTAA 2 cut(s) 119, 573
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 63, 213
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 3 cut(s) 17, 79, 491
Van91I CCANNNNNTGG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 4, 344
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.