Rorug07G0276500

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000242
Physical Location & Seq
Forward (+)
26454381 .. 26464581
10201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0276500.1

Sequence Viewer

Length: 3042 bp
ATGGCGAGAGGGGGAGGCGGAGGAAGAGGGAGAGGCGCAAAGCGGCAAAGGGACCAAGGCTCAGAAACCCATAACCCGAATCAAACTGAAGATGTTGCTGTCAAAGTTGGTGAATATGGTGATGGGGTTGTTCTTTCTGAGATAAAGGCAGTGTCTTTTGGTGGTGTAGAGAAGGGTGAGGACAGTTTGGGAAACGGTCAAAATGAAGAAGTTGCTGTGAGTGTGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGGTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTGCTTTTGGTGGTGATGAGATTGCTATGCTGACTTTGAGGAAGAGGCCTGAACGGAACAAGAGAGTTAGAGTTATGCAGGCAGAGGGAAATGGTGAGAAAGGTGAAGAGAATGGGGCTTCTGTGAACAAGAAAGGTAGGAAAAAGGTGACATTTGCGAAGGAAGAGGGAAAGAAAGGTGTTTCGGAAGTGAATAATGACAAGAAGCGCGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAATTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGTGGATTGAGGAGGTATCCCTAATGTGCCACCAGTGTCAGAGGAATGATAAGGGAAGGGTTGTTCGGTGCAAAAAGTGCAGGACAAAGCGATATTGTGTTCCTTGCATAGATAATTGGTATCCACATACATCAGAGGATGCCATTGCTGAGGCTTGTCCTGTATGCCGTGGAAATTGCAATTGCAAAGCATGCTTGCGCTTAGATATACCAGTTAAAAATCTGAAGAACCAAGATTTAGTACTTGACAAAGATGCAAGAGTTGAGCACTCTAAGTACTTAATTCATGCACTGCTTCCATCCTTGAAAAGAATTCATGAAGAACAAGAGAATGAGATGGCGATGGAGGCAAGGACAAAAGGATTATCTAACTTGAAGCTCCAGATACCAAAGTCTGACTGTGCTGCTGATGTTCGCGTGTATTGCAACAACTGCAGAACTTCTATTTTTGATTATCACAGAAGCTGTCCTAAATGTTCATATGACCTCTGCCTCATTTGTTGCCGGGAGATTCGAGAAGGACAATTGCAGCTAGGTGGGGAGGAAGTGACTTTGGAGTATGTTTCTCGGGGCCTACCTTATTTGCATGGTGGAGAGGAAGACAACAAAAAAAGAAAGGGAAAGAGAAATAGGAATGTTGTGGAGCCACCCTCTGAAACTAGTCCCAAAAGTTCTGGAAAGCGAACATTTGAGTGGAAATCATATGAAGATGGAAGCATACTTTGCCCCCCAGAGGACATGGGAGGTTGTGGCAGTGGTAATCTAGAATTGAGATGCATGTTTTCCAAAAATTACATCAAAGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAGCTTACAAACTTGTGTATTCAAGTAGAACTTCTGCAGAGAGGTGTTCATGTCTCAACTCTGTTGATGATGTCAATTCAAGCATCAATGCATCAAGGAAAGCAGCTTCTCGAGACAATTCTGAGGACAACTATCTGTACTGTGCAAGGGCTGGAGATGTCCAAGTAGAGGATTTAAAGCATTTCCAGTGGCATTGGATCAAGGGTGAGCCTGTTATTGTTAGCAATGCACTTGATACTGCATCAGGTTTAAGCTGGGAACCATTGGTCATGTGGCGCGCTTGTCGTCAGATGCAACATACTAAGCATGGTAAACATTTGGACGTCAAAGCAATAGATTGCCTGGATTGGTGTGAGGGGGATATCAATATCCACCAATTTTTTACTGGATACTCGAAGGGACGGTTTGATCAAGAGAATTGGCCACAGATATTGAAACTGAAAGATTGGCCGCCAACTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTCATTTGTTGTCTGCCTTATAAGGAATATACTCATCCTCGCAATGGTCCTCTAAACCTTTTTGCCAAATTACCATCAGAATGTGTAAAACCAGACATGGGACCAAAGACATATATTGCTTATGGTTTTTCCCAGGAGCTTGGACGTGGAGATTCTGTAACCAAGCTTCATTGCGATATGTCTGATGCGGTGAATGTTTTGACACATACCACTGAAGTGAACCTTACTCCTGAGCAACTTACTGTCATTGAAAAGTTGAAAAAGAAGCATGCTCAACAAGACCAAAGAGAAATTTTTGGCAATTGTCAGACTGTGGATGATGATGTTGATAGTGGCAAGGCTGGTGGTGATTCTTGTTTCAGTGCTGCTGATGATAAACAACTTCTTAATGAAGTTGATAATAATAGCAGTGGTGTAGCTGTTCCAGAACTGGTTGATCCAATTGTTCAACATGTTGGAGATGCTTCAATGGGATCTCTGTCCGAAAAGAACAAAGAGGCAGAATTAGATCATGATATCGGTAGTGAAATGCCTGCAAGAAATTATGGAAATAAGTTGGAAGAGTCGGATGTCAATGAGGGAGGTGCTTTATGGGACATATTCCGTAGACAGGATGTTCCTAAGCTGCAGGAGTATCTCATGAAGCATTTCAAGGAATTCAGGCACATACACTGTTGTCCATTGCAGCAGGTTATTCATGCCATACATGATCAGACATTTTATCTTACAATGGAGCACAAAAAGAAGCTTAAAGAGGAATATGGAATTGAACCATGGACCTTCATTCAAAACCTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCGCATCAAGTCAGGAACTTGAAGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTCGGCGAGTGCTTTCACTTGACAGAAGTATTCCGCACACTTCCAGAAGATCATAGGGCTAAAGAGGACAAATTGGAGGTAAAGAAAATGATTGTTCATTCTGTCACTGATGCTCTGGAGGAACTAAATCAGAATGTGAGGTCTAAGGAAGCCACTAATCCACCTCAATCAAGTCAGAGTGATGGAGATTATATGGTCCAGGATACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1013

Amino Acids

114.21

Weight (kDa)

6.57

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 210 - 270 5.5e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 841 - 938 4.3e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1959
AatII GACGTC 1 cut(s) 1767
Acc36I ACCTGC 1 cut(s) 2617
AccI GTMKAC 1 cut(s) 2545
AccII CGCG 3 cut(s) 507, 1026, 1719
AciI CCGC 6 cut(s) 18, 43, 1892, 2126, 2765, 2863
AclWI GGATC 3 cut(s) 1646, 2369, 2419
AcoI YGGCCR 2 cut(s) 1862, 1889
AcsI RAATTY 3 cut(s) 921, 2229, 2594
AcuI CTGAAG 3 cut(s) 108, 854, 2172
AcyI GRCGYC 1 cut(s) 1764
AfaI GTAC 3 cut(s) 852, 887, 1580
AfiI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2548
AflIII ACRYGT 1 cut(s) 2389
AhlI ACTAGT 1 cut(s) 1268
AjiI CACGTC 1 cut(s) 2084
AjnI CCWGG 4 cut(s) 241, 1782, 2070, 3027
AleI CACNNNNGTG 1 cut(s) 2153
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
Alw21I GWGCWC 2 cut(s) 879, 2676
Alw26I GTCTC 3 cut(s) 1499, 1548, 2821
AlwI GGATC 3 cut(s) 1646, 2369, 2419
AlwNI CAGNNNCTG 1 cut(s) 1074
Ama87I CYCGRG 2 cut(s) 1176, 1551
AoxI GGCC 5 cut(s) 344, 566, 1180, 1862, 1889
ApeKI GCWGC 6 cut(s) 1013, 1138, 1544, 2303, 2563, 2623
ApoI RAATTY 3 cut(s) 921, 2229, 2594
Asp700I GAANNNNTTC 1 cut(s) 2585
AspLEI GCGC 6 cut(s) 38, 507, 810, 1719, 1721, 1917
AspS9I GGNCC 6 cut(s) 52, 1180, 1985, 2039, 2715, 3025
AsuC2I CCSGG 1 cut(s) 1115
AvaI CYCGRG 2 cut(s) 1176, 1551
AvaII GGWCC 5 cut(s) 52, 1985, 2039, 2715, 3025
BaeI ACNNNNGTAYC 2 cut(s) 986, 1019
BalI TGGCCA 1 cut(s) 1864
BarI GAAGNNNNNNTAC 2 cut(s) 2088, 2120
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 2 cut(s) 879, 2676
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 6 cut(s) 1000, 1150, 1556, 2290, 2550, 2635
BccI CCATC 9 cut(s) 116, 275, 533, 916, 940, 946, 1313, 2020, 3005
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 4 cut(s) 243, 1784, 2072, 3029
BciVI GTATCC 4 cut(s) 637, 741, 1823, 3025
BclI TGATCA 2 cut(s) 1849, 2647
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 3 cut(s) 1499, 1548, 2821
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 3 cut(s) 1142, 1269, 1373
BfmI CTRYAG 4 cut(s) 1042, 1476, 2564, 2754
BfoI RGCGCY 1 cut(s) 1918
BfuAI ACCTGC 1 cut(s) 2617
BfuI GTATCC 4 cut(s) 637, 741, 1823, 3025
BisI GCNGC 8 cut(s) 44, 1014, 1139, 1545, 1892, 2304, 2564, 2624
BlsI GCNGC 8 cut(s) 45, 1015, 1140, 1546, 1893, 2305, 2565, 2625
BmcAI AGTACT 2 cut(s) 852, 887
Bme1390I CCNGG 5 cut(s) 243, 1115, 1784, 2072, 3029
Bme18I GGWCC 5 cut(s) 52, 1985, 2039, 2715, 3025
BmeT110I CYCGRG 2 cut(s) 1176, 1551
BmgBI CACGTC 1 cut(s) 2084
BmgT120I GGNCC 6 cut(s) 52, 1180, 1985, 2039, 2715, 3025
BmiI GGNNCC 5 cut(s) 53, 1181, 1254, 1701, 2040
BmrFI CCNGG 5 cut(s) 243, 1115, 1784, 2072, 3029
BpiI GAAGAC 1 cut(s) 1215
BplI GAGNNNNNCTC 2 cut(s) 1244, 1276
BpmI CTGGAG 3 cut(s) 974, 1614, 2966
Bpu10I CCTNAGC 3 cut(s) 759, 2169, 2559
BpuMI CCSGG 1 cut(s) 1115
BsaHI GRCGYC 1 cut(s) 1764
BsaJI CCNNGG 6 cut(s) 55, 242, 778, 2070, 2711, 2731
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 2079, 2109, 2727, 2757
Bsc4I CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2548
Bse1I ACTGG 5 cut(s) 643, 821, 1627, 1831, 2373
Bse3DI GCAATG 6 cut(s) 753, 1672, 1987, 2107, 2618, 2811
BseBI CCWGG 4 cut(s) 243, 1784, 2072, 3029
BseDI CCNNGG 6 cut(s) 55, 242, 778, 2070, 2711, 2731
BseGI GGATG 7 cut(s) 754, 908, 1972, 2260, 2512, 2557, 2765
BseLI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2548
BseMI GCAATG 6 cut(s) 753, 1672, 1987, 2107, 2618, 2811
BseMII CTCAG 8 cut(s) 75, 129, 519, 563, 750, 1554, 1926, 2160
BseNI ACTGG 5 cut(s) 643, 821, 1627, 1831, 2373
BsePI GCGCGC 1 cut(s) 1717
BseRI GAGGAG 4 cut(s) 545, 614, 635, 1925
BseXI GCAGC 6 cut(s) 1000, 1150, 1556, 2290, 2550, 2635
BseYI CCCAGC 1 cut(s) 1695
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 3 cut(s) 507, 1026, 1719
BshFI GGCC 5 cut(s) 346, 568, 1182, 1864, 1891
BsiHKAI GWGCWC 2 cut(s) 879, 2676
BsiHKCI CYCGRG 2 cut(s) 1176, 1551
BsiSI CCGG 1 cut(s) 1114
BslFI GGGAC 6 cut(s) 65, 597, 1257, 1854, 2052, 2546
BslI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2548
BsmAI GTCTC 3 cut(s) 1499, 1548, 2821
BsmFI GGGAC 6 cut(s) 65, 597, 1257, 1854, 2052, 2546
BsnI GGCC 5 cut(s) 346, 568, 1182, 1864, 1891
BsoBI CYCGRG 2 cut(s) 1176, 1551
Bsp1286I GDGCHC 2 cut(s) 879, 2676
Bsp143I GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
Bsp19I CCATGG 1 cut(s) 2711
BspACI CCGC 6 cut(s) 18, 43, 1892, 2126, 2765, 2863
BspANI GGCC 5 cut(s) 346, 568, 1182, 1864, 1891
BspCNI CTCAG 8 cut(s) 74, 130, 520, 564, 751, 1555, 1927, 2161
BspFNI CGCG 3 cut(s) 507, 1026, 1719
BspHI TCATGA 3 cut(s) 925, 2449, 2577
BspLI GGNNCC 5 cut(s) 53, 1181, 1254, 1701, 2040
BspMAI CTGCAG 4 cut(s) 1046, 1480, 2568, 2758
BspMI ACCTGC 1 cut(s) 2617
BspPI GGATC 3 cut(s) 1646, 2369, 2419
BsrDI GCAATG 6 cut(s) 753, 1672, 1987, 2107, 2618, 2811
BsrI ACTGG 5 cut(s) 643, 821, 1627, 1831, 2373
BssECI CCNNGG 6 cut(s) 55, 242, 778, 2070, 2711, 2731
BssHII GCGCGC 1 cut(s) 1717
BssMI GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
BssNI GRCGYC 1 cut(s) 1764
BssT1I CCWWGG 3 cut(s) 55, 2711, 2731
Bst2UI CCWGG 4 cut(s) 243, 1784, 2072, 3029
Bst4CI ACNGT 8 cut(s) 185, 197, 1010, 1583, 1845, 2182, 2251, 2612
Bst6I CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1425, 2493
BstACI GRCGYC 1 cut(s) 1764
BstAPI GCANNNNNTGC 4 cut(s) 687, 801, 1041, 1332
BstC8I GCNNGC 7 cut(s) 378, 519, 802, 806, 1719, 2208, 2472
BstDSI CCRYGG 2 cut(s) 778, 2711
BstF5I GGATG 7 cut(s) 754, 908, 1972, 2260, 2512, 2557, 2765
BstFNI CGCG 3 cut(s) 507, 1026, 1719
BstH2I RGCGCY 1 cut(s) 1918
BstHHI GCGC 6 cut(s) 38, 507, 810, 1719, 1721, 1917
BstKTI GATC 7 cut(s) 1641, 1852, 2377, 2414, 2449, 2650, 2881
BstMAI GTCTC 3 cut(s) 1499, 1548, 2821
BstMBI GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
BstMWI GCNNNNNNNGC 6 cut(s) 687, 801, 956, 1032, 1041, 1332
BstNI CCWGG 4 cut(s) 243, 1784, 2072, 3029
BstNSI RCATGY 4 cut(s) 804, 1390, 2210, 2393
BstSCI CCNGG 5 cut(s) 241, 1113, 1782, 2070, 3027
BstSFI CTRYAG 4 cut(s) 1042, 1476, 2564, 2754
BstUI CGCG 3 cut(s) 507, 1026, 1719
BstV1I GCAGC 6 cut(s) 1000, 1150, 1556, 2290, 2550, 2635
BstV2I GAAGAC 1 cut(s) 1215
BstX2I RGATCY 1 cut(s) 2411
BstXI CCANNNNNNTGG 1 cut(s) 2078
BstYI RGATCY 1 cut(s) 2411
BsuI GTATCC 4 cut(s) 637, 741, 1823, 3025
BsuRI GGCC 5 cut(s) 346, 568, 1182, 1864, 1891
BtgI CCRYGG 2 cut(s) 778, 2711
BtgZI GCGATG 1 cut(s) 965
BtrI CACGTC 1 cut(s) 2084
BtsCI GGATG 7 cut(s) 754, 908, 1972, 2260, 2512, 2557, 2765
BtsI GCAGTG 4 cut(s) 156, 899, 1369, 2353
BveI ACCTGC 1 cut(s) 2617
Cac8I GCNNGC 7 cut(s) 378, 519, 802, 806, 1719, 2208, 2472
CaiI CAGNNNCTG 1 cut(s) 1074
CciI TCATGA 3 cut(s) 925, 2449, 2577
CfoI GCGC 6 cut(s) 38, 507, 810, 1719, 1721, 1917
Cfr13I GGNCC 6 cut(s) 52, 1180, 1985, 2039, 2715, 3025
Csp6I GTAC 3 cut(s) 851, 886, 1579
CspCI CAANNNNNGTGG 4 cut(s) 1854, 1889, 2263, 2298
CviQI GTAC 3 cut(s) 851, 886, 1579
DpnI GATC 7 cut(s) 1640, 1851, 2376, 2413, 2448, 2649, 2880
DpnII GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
DraI TTTAAA 1 cut(s) 1617
EaeI YGGCCR 2 cut(s) 1862, 1889
Eam1104I CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1425, 2493
EarI CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1425, 2493
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 55, 2711, 2731
Eco147I AGGCCT 2 cut(s) 346, 568
Eco32I GATATC 2 cut(s) 1804, 2455
Eco47I GGWCC 5 cut(s) 52, 1985, 2039, 2715, 3025
Eco57I CTGAAG 3 cut(s) 108, 854, 2172
Eco88I CYCGRG 2 cut(s) 1176, 1551
EcoO109I RGGNCCY 1 cut(s) 1180
EcoRI GAATTC 2 cut(s) 921, 2594
EcoRII CCWGG 4 cut(s) 241, 1782, 2070, 3027
EcoRV GATATC 2 cut(s) 1804, 2455
EcoT14I CCWWGG 3 cut(s) 55, 2711, 2731
EcoT22I ATGCAT 3 cut(s) 1388, 1534, 2795
ErhI CCWWGG 3 cut(s) 55, 2711, 2731
FalI AAGNNNNNCTT 4 cut(s) 1456, 1488, 2145, 2177
FaqI GGGAC 6 cut(s) 65, 597, 1257, 1854, 2052, 2546
FauNDI CATATG 2 cut(s) 1090, 1312
FbaI TGATCA 2 cut(s) 1849, 2647
FblI GTMKAC 1 cut(s) 2545
Fnu4HI GCNGC 8 cut(s) 44, 1014, 1139, 1545, 1892, 2304, 2564, 2624
FokI GGATG 7 cut(s) 761, 895, 1959, 2267, 2519, 2564, 2772
Fsp4HI GCNGC 8 cut(s) 44, 1014, 1139, 1545, 1892, 2304, 2564, 2624
FspBI CTAG 3 cut(s) 1142, 1269, 1373
GlaI GCGC 6 cut(s) 37, 506, 809, 1718, 1720, 1916
GluI GCNGC 8 cut(s) 44, 1014, 1139, 1545, 1892, 2304, 2564, 2624
GsaI CCCAGC 1 cut(s) 1699
GsuI CTGGAG 3 cut(s) 974, 1614, 2966
HaeII RGCGCY 1 cut(s) 1918
HaeIII GGCC 5 cut(s) 346, 568, 1182, 1864, 1891
HapII CCGG 1 cut(s) 1114
HhaI GCGC 6 cut(s) 38, 507, 810, 1719, 1721, 1917
Hin1I GRCGYC 1 cut(s) 1764
Hin6I GCGC 6 cut(s) 36, 505, 808, 1717, 1719, 1915
HinP1I GCGC 6 cut(s) 36, 505, 808, 1717, 1719, 1915
HindIII AAGCTT 3 cut(s) 1443, 2102, 2684
HinfI GANTC 5 cut(s) 79, 1120, 2090, 2288, 2501
HpaII CCGG 1 cut(s) 1114
Hpy166II GTNNAC 4 cut(s) 424, 1754, 2158, 2546
Hpy8I GTNNAC 4 cut(s) 424, 1754, 2158, 2546
HpyAV CCTTC 8 cut(s) 166, 253, 451, 660, 1121, 1831, 1928, 2728
HpyCH4III ACNGT 8 cut(s) 185, 197, 1010, 1583, 1845, 2182, 2251, 2612
HpyCH4IV ACGT 2 cut(s) 1764, 2083
HpyF10VI GCNNNNNNNGC 6 cut(s) 687, 801, 956, 1032, 1041, 1332
HpySE526I ACGT 2 cut(s) 1764, 2083
Hsp92I GRCGYC 1 cut(s) 1764
HspAI GCGC 6 cut(s) 36, 505, 808, 1717, 1719, 1915
Ksp22I TGATCA 2 cut(s) 1849, 2647
Kzo9I GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
LmnI GCTCC 7 cut(s) 577, 601, 993, 1252, 1912, 2074, 2671
Lsp1109I GCAGC 6 cut(s) 1000, 1150, 1556, 2290, 2550, 2635
MaeI CTAG 3 cut(s) 1142, 1269, 1373
MaeII ACGT 2 cut(s) 1764, 2083
MaeIII GTNAC 4 cut(s) 445, 1156, 2095, 2932
MalI GATC 7 cut(s) 1640, 1851, 2376, 2413, 2448, 2649, 2880
MboI GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
MfeI CAATTG 4 cut(s) 790, 1133, 2239, 2379
MflI RGATCY 1 cut(s) 2411
MhlI GDGCHC 2 cut(s) 879, 2676
MlsI TGGCCA 1 cut(s) 1864
MluNI TGGCCA 1 cut(s) 1864
MlyI GAGTC 1 cut(s) 2510
MmeI TCCRAC 3 cut(s) 2374, 2475, 2484
Mox20I TGGCCA 1 cut(s) 1864
Mph1103I ATGCAT 3 cut(s) 1388, 1534, 2795
MroXI GAANNNNTTC 1 cut(s) 2585
MscI TGGCCA 1 cut(s) 1864
MseI TTAA 6 cut(s) 825, 890, 1616, 1691, 2325, 2688
MslI CAYNNNNRTG 3 cut(s) 1300, 2017, 2153
Msp20I TGGCCA 1 cut(s) 1864
MspI CCGG 1 cut(s) 1114
MspR9I CCNGG 5 cut(s) 243, 1115, 1784, 2072, 3029
MunI CAATTG 4 cut(s) 790, 1133, 2239, 2379
MvaI CCWGG 4 cut(s) 243, 1784, 2072, 3029
MvnI CGCG 3 cut(s) 507, 1026, 1719
MwoI GCNNNNNNNGC 6 cut(s) 687, 801, 956, 1032, 1041, 1332
NciI CCSGG 1 cut(s) 1115
NcoI CCATGG 1 cut(s) 2711
NdeI CATATG 2 cut(s) 1090, 1312
NdeII GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
NlaIV GGNNCC 5 cut(s) 53, 1181, 1254, 1701, 2040
NmuCI GTSAC 3 cut(s) 445, 1156, 2932
NsiI ATGCAT 3 cut(s) 1388, 1534, 2795
NspI RCATGY 4 cut(s) 804, 1390, 2210, 2393
OliI CACNNNNGTG 1 cut(s) 2153
PaeI GCATGC 2 cut(s) 804, 2210
PaeR7I CTCGAG 1 cut(s) 1551
PagI TCATGA 3 cut(s) 925, 2449, 2577
PauI GCGCGC 1 cut(s) 1717
PceI AGGCCT 2 cut(s) 346, 568
PciI ACATGT 1 cut(s) 2389
PdmI GAANNNNTTC 1 cut(s) 2585
PfeI GAWTC 4 cut(s) 79, 1120, 2090, 2288
PflFI GACNNNGTC 1 cut(s) 2813
PfoI TCCNGGA 1 cut(s) 3027
PkrI GCNGC 8 cut(s) 45, 1015, 1140, 1546, 1893, 2305, 2565, 2625
PleI GAGTC 1 cut(s) 2509
PpsI GAGTC 1 cut(s) 2509
PscI ACATGT 1 cut(s) 2389
PsiI TTATAA 1 cut(s) 1959
Psp6I CCWGG 4 cut(s) 241, 1782, 2070, 3027
PspFI CCCAGC 1 cut(s) 1695
PspGI CCWGG 4 cut(s) 241, 1782, 2070, 3027
PspN4I GGNNCC 5 cut(s) 53, 1181, 1254, 1701, 2040
PspPI GGNCC 6 cut(s) 52, 1180, 1985, 2039, 2715, 3025
PstI CTGCAG 4 cut(s) 1046, 1480, 2568, 2758
PstNI CAGNNNCTG 1 cut(s) 1074
PsuI RGATCY 1 cut(s) 2411
PsyI GACNNNGTC 1 cut(s) 2813
PteI GCGCGC 1 cut(s) 1717
RsaI GTAC 3 cut(s) 852, 887, 1580
RsaNI GTAC 3 cut(s) 851, 886, 1579
RseI CAYNNNNRTG 3 cut(s) 1300, 2017, 2153
SaqAI TTAA 6 cut(s) 825, 890, 1616, 1691, 2325, 2688
SatI GCNGC 8 cut(s) 44, 1014, 1139, 1545, 1892, 2304, 2564, 2624
Sau3AI GATC 7 cut(s) 1638, 1849, 2374, 2411, 2446, 2647, 2878
Sau96I GGNCC 6 cut(s) 52, 1180, 1985, 2039, 2715, 3025
SbfI CCTGCAGG 1 cut(s) 2758
ScaI AGTACT 2 cut(s) 852, 887
SchI GAGTC 1 cut(s) 2510
ScrFI CCNGG 5 cut(s) 243, 1115, 1784, 2072, 3029
SdaI CCTGCAGG 1 cut(s) 2758
SduI GDGCHC 2 cut(s) 879, 2676
SfcI CTRYAG 4 cut(s) 1042, 1476, 2564, 2754
Sfr274I CTCGAG 1 cut(s) 1551
SinI GGWCC 5 cut(s) 52, 1985, 2039, 2715, 3025
SlaI CTCGAG 1 cut(s) 1551
SmiMI CAYNNNNRTG 3 cut(s) 1300, 2017, 2153
SmlI CTYRAG 1 cut(s) 1551
SmoI CTYRAG 1 cut(s) 1551
SpeI ACTAGT 1 cut(s) 1268
SphI GCATGC 2 cut(s) 804, 2210
Sse8387I CCTGCAGG 1 cut(s) 2758
SseBI AGGCCT 2 cut(s) 346, 568
SsiI CCGC 6 cut(s) 18, 43, 1892, 2126, 2765, 2863
SspMI CTAG 3 cut(s) 1142, 1269, 1373
StuI AGGCCT 2 cut(s) 346, 568
StyD4I CCNGG 5 cut(s) 241, 1113, 1782, 2070, 3027
StyI CCWWGG 3 cut(s) 55, 2711, 2731
TaaI ACNGT 8 cut(s) 185, 197, 1010, 1583, 1845, 2182, 2251, 2612
TaiI ACGT 2 cut(s) 1767, 2086
TaqI TCGA 3 cut(s) 1123, 1552, 1835
TatI WGTACW 3 cut(s) 850, 885, 1578
TauI GCSGC 2 cut(s) 46, 1894
TfiI GAWTC 4 cut(s) 79, 1120, 2090, 2288
Tru1I TTAA 6 cut(s) 825, 890, 1616, 1691, 2325, 2688
Tru9I TTAA 6 cut(s) 825, 890, 1616, 1691, 2325, 2688
TseFI GTSAC 3 cut(s) 445, 1156, 2932
TseI GCWGC 6 cut(s) 1013, 1138, 1544, 2303, 2563, 2623
Tsp45I GTSAC 3 cut(s) 445, 1156, 2932
TspGWI ACGGA 3 cut(s) 367, 611, 2531
Tth111I GACNNNGTC 1 cut(s) 2813
VpaK11BI GGWCC 5 cut(s) 52, 1985, 2039, 2715, 3025
XapI RAATTY 3 cut(s) 921, 2229, 2594
XbaI TCTAGA 1 cut(s) 1372
XceI RCATGY 4 cut(s) 804, 1390, 2210, 2393
XcmI CCANNNNNNNNNTGG 2 cut(s) 1710, 1823
XhoI CTCGAG 1 cut(s) 1551
XmiI GTMKAC 1 cut(s) 2545
XmnI GAANNNNTTC 1 cut(s) 2585
XspI CTAG 3 cut(s) 1142, 1269, 1373
ZraI GACGTC 1 cut(s) 1765
ZrmI AGTACT 2 cut(s) 852, 887
Zsp2I ATGCAT 3 cut(s) 1388, 1534, 2795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.