Rmu_sc0015525.1_g000007

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015525.1
OG0000242
Physical Location & Seq
Forward (+)
44675 .. 45091
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015525.1_g000007.1.cds

Sequence Viewer

Length: 417 bp
atgtccgaatgctgcaaaaaaggcaagctttaccccacttacaagtggtcaccacatgtgtctaagtctacaaaagctaccttgacactcaacagctttcagaaaggtggtgatggtggcagaccatctgaatgtgatggtagataccactcggatagcacccctgtggtggcattgtcaacagggtggtttaacaatagcaagaggtgtttgcactacattaccatccatgctaatgggaggagtgtgaaggcaaaggtggttgatgagtgtgactccacaatggggtgtgatggtgaacatgattaccagcctccatgtcctaataatattgttgatgcctctaaagctgtctggaaggccttgggagttataaatgactggggtgaaatggaaatacgctggtctgatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

7.59

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccI GTMKAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 169, 285
AflIII ACRYGT 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 4 cut(s) 28, 77, 96, 350
AluI AGCT 4 cut(s) 28, 77, 96, 350
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 42, 122, 308, 398
BccI CCATC 5 cut(s) 107, 131, 133, 233, 287
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 2 cut(s) 328, 400
BmuI ACTGGG 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 285
Bse1I ACTGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 169, 285
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 256
BshFI GGCC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 169, 285
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 362
BspANI GGCC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 48
BstF5I GGATG 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 21, 347
BstNSI RCATGY 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 26
CviAII CATG 4 cut(s) 56, 230, 302, 318
CviJI RGCY 6 cut(s) 28, 77, 96, 313, 350, 362
CviKI_1 RGCY 6 cut(s) 28, 77, 96, 313, 350, 362
DdeI CTNAG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 363
Eco147I AGGCCT 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 48
EcoO65I GGTNACC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 59, 233, 305, 321
FaiI YATR 5 cut(s) 57, 231, 303, 319, 374
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 4 cut(s) 55, 229, 301, 317
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 4 cut(s) 59, 233, 305, 321
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 275
HphI GGTGA 4 cut(s) 42, 122, 308, 398
Hpy166II GTNNAC 3 cut(s) 69, 180, 299
Hpy188I TCNGA 5 cut(s) 7, 102, 130, 154, 409
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 69, 180, 299
HpyAV CCTTC 2 cut(s) 244, 352
HpyCH4V TGCA 2 cut(s) 15, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 347
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 4 cut(s) 59, 233, 305, 321
LpnPI CCDG 6 cut(s) 168, 177, 323, 340, 367, 388
LweI GCATC 2 cut(s) 328, 400
MaeIII GTNAC 2 cut(s) 48, 272
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 4 cut(s) 198, 234, 324, 352
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 3 cut(s) 130, 164, 234
Mva1269I GAATGC 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 21, 347
NlaIII CATG 4 cut(s) 59, 233, 305, 321
NmuCI GTSAC 2 cut(s) 48, 272
NspI RCATGY 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 164
PceI AGGCCT 1 cut(s) 362
PciI ACATGT 1 cut(s) 55
PctI GAATGC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 55
PsiI TTATAA 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 48
RseI CAYNNNNRTG 3 cut(s) 130, 164, 234
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 13
SchI GAGTC 1 cut(s) 269
SetI ASST 8 cut(s) 30, 79, 83, 98, 109, 209, 261, 352
SfaNI GCATC 2 cut(s) 328, 400
SmiMI CAYNNNNRTG 3 cut(s) 130, 164, 234
SseBI AGGCCT 1 cut(s) 362
SspI AATATT 1 cut(s) 331
StuI AGGCCT 1 cut(s) 362
StyI CCWWGG 1 cut(s) 363
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 2 cut(s) 48, 272
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 2 cut(s) 48, 272
XceI RCATGY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.