RLG00000029482

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
39344858 .. 39346648
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029482

Sequence Viewer

Length: 543 bp
ATGCTTCATCTTTGTATCAACTTTTGGTGTTCCATGTCCAAGAAACAGCAGAGCATTATTGTGAAGCTCAGCAATGTCGTCCAAGCGGAAGAATCAGAGGAAGGAAGCCCCCTTCCTGGACAATGTAACCGGGAGGATGACTCTGGAAAAATGTATTCAACCTACACTTGCTCACCACCAATGTCCGGTAACACCCAGGCATACCTCACTCTCAACAGCTTTGAGGTAGGTGGTGACGGAGGAGGACCATCTGAATGTGACGGCAAGTATCACAATGACAACACTCCAGTTGTTGCATTATCCATTGGATGGTACAATGGTGGATCAAGGTGCCTTAACAACATCAGAATTAATGATAATGGGCGCAGCGTGGTGGCCATGGTGGTGGATGAGTGCGACTCTACCGAGGGATGTGATGCTGACCATGATTATCAGCCTCCTTGTCCCAACAACATCGATGATGCCTCCATGGCTGTCTGGAAAGCCTTAGGTGTATCCGAGGACAACTGGGGTGGCTTGGATATCACATGGTCCGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.49

Weight (kDa)

4.21

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 39 - 180 4.5e-53 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 309
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 375
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 116, 185, 309
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 2 cut(s) 115, 195
AluBI AGCT 2 cut(s) 67, 219
AluI AGCT 2 cut(s) 67, 219
AlwI GGATC 1 cut(s) 331
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 366
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 245, 531
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 165, 245
AvaII GGWCC 2 cut(s) 245, 531
AxyI CCTNAGG 1 cut(s) 487
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 378
BccI CCATC 2 cut(s) 256, 303
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 117, 197
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 1 cut(s) 367
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 3 cut(s) 117, 131, 197
Bme18I GGWCC 2 cut(s) 245, 531
BmgT120I GGNCC 2 cut(s) 245, 531
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 3 cut(s) 117, 131, 197
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 406, 451
BmuI ACTGGG 1 cut(s) 517
BplI GAGNNNNNCTC 4 cut(s) 125, 157, 383, 415
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 456
BsaJI CCNNGG 5 cut(s) 195, 378, 405, 468, 498
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 185, 309
Bse1I ACTGG 2 cut(s) 287, 512
Bse21I CCTNAGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 2 cut(s) 117, 197
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 5 cut(s) 195, 378, 405, 468, 498
BseGI GGATG 4 cut(s) 142, 314, 394, 416
BseLI CCNNNNNNNGG 3 cut(s) 116, 185, 309
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 287, 512
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 2 cut(s) 130, 186
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 3 cut(s) 116, 185, 309
BsmFI GGGAC 1 cut(s) 429
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 323
Bsp1720I GCTNAGC 1 cut(s) 68
Bsp19I CCATGG 2 cut(s) 378, 468
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 2 cut(s) 287, 512
BssECI CCNNGG 5 cut(s) 195, 378, 405, 468, 498
BssMI GATC 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 378, 468
Bst2UI CCWGG 2 cut(s) 117, 197
BstDEI CTNAG 3 cut(s) 68, 487, 540
BstDSI CCRYGG 2 cut(s) 378, 468
BstF5I GGATG 4 cut(s) 142, 314, 394, 416
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 2 cut(s) 117, 197
BstSCI CCNGG 3 cut(s) 115, 129, 195
BstV1I GCAGC 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 487
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 377
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 2 cut(s) 378, 468
BtsCI GGATG 4 cut(s) 142, 314, 394, 416
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 245, 531
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 1 cut(s) 313
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 5 cut(s) 34, 379, 425, 469, 528
CviJI RGCY 8 cut(s) 67, 108, 219, 377, 436, 473, 485, 516
CviKI_1 RGCY 8 cut(s) 67, 108, 219, 377, 436, 473, 485, 516
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 3 cut(s) 68, 487, 540
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 378, 468
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 245, 531
Eco81I CCTNAGG 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 115, 195
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 378, 468
ErhI CCWWGG 2 cut(s) 378, 468
FaeI CATG 5 cut(s) 37, 382, 428, 472, 531
FaiI YATR 6 cut(s) 35, 202, 380, 426, 470, 529
FaqI GGGAC 1 cut(s) 429
FatI CATG 5 cut(s) 33, 378, 424, 468, 527
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 4 cut(s) 149, 321, 401, 423
Fsp4HI GCNGC 1 cut(s) 367
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 377
HapII CCGG 2 cut(s) 130, 186
HhaI GCGC 1 cut(s) 366
Hin1II CATG 5 cut(s) 37, 382, 428, 472, 531
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 3 cut(s) 92, 140, 398
HpaII CCGG 2 cut(s) 130, 186
HphI GGTGA 2 cut(s) 165, 245
Hpy188I TCNGA 5 cut(s) 97, 253, 347, 499, 535
Hpy188III TCNNGA 2 cut(s) 144, 478
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 2 cut(s) 95, 122
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 68, 487, 540
Hsp92II CATG 5 cut(s) 37, 382, 428, 472, 531
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 323
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 2 cut(s) 406, 451
MaeIII GTNAC 4 cut(s) 125, 188, 233, 257
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 2 cut(s) 134, 392
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 2 cut(s) 336, 351
MslI CAYNNNNRTG 3 cut(s) 59, 253, 383
Msp20I TGGCCA 1 cut(s) 377
MspI CCGG 2 cut(s) 130, 186
MspR9I CCNGG 3 cut(s) 117, 131, 197
MvaI CCWGG 2 cut(s) 117, 197
MwoI GCNNNNNNNGC 1 cut(s) 470
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 2 cut(s) 378, 468
NdeII GATC 1 cut(s) 323
NlaIII CATG 5 cut(s) 37, 382, 428, 472, 531
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 2 cut(s) 233, 257
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 2 cut(s) 134, 392
PpsI GAGTC 2 cut(s) 134, 392
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 115, 195
PspGI CCWGG 2 cut(s) 115, 195
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 245, 531
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 3 cut(s) 59, 253, 383
SaqAI TTAA 2 cut(s) 336, 351
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 2 cut(s) 245, 531
SchI GAGTC 2 cut(s) 134, 392
ScrFI CCNGG 3 cut(s) 117, 131, 197
SetI ASST 8 cut(s) 69, 164, 207, 221, 228, 232, 332, 493
SfaNI GCATC 2 cut(s) 406, 451
SinI GGWCC 2 cut(s) 245, 531
SmiMI CAYNNNNRTG 3 cut(s) 59, 253, 383
Sse9I AATT 1 cut(s) 348
SsiI CCGC 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 115, 129, 195
StyI CCWWGG 2 cut(s) 378, 468
TaqI TCGA 1 cut(s) 456
TasI AATT 1 cut(s) 348
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 336, 351
Tru9I TTAA 2 cut(s) 336, 351
TseFI GTSAC 2 cut(s) 233, 257
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 233, 257
TspGWI ACGGA 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 245, 531
VspI ATTAAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.