RLG00000001312

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000242
Physical Location & Seq
Forward (+)
13926565 .. 13927657
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001312

Sequence Viewer

Length: 594 bp
ATGACTTGCTCCTCAAAAGGGTCTTTTCTAGTCATTCTCCTTTTAGCAATTTGCTTGGTTAGTGAAGCTCAGCAATGTAGTCCAAGTGGAAGGATTAGAGGAAAGAAGCCCCCTCCAGGACAATGTAACCGAGAGGATGACTCTGACTGCTGCAAAGCTGGAAAAATGTACCCAACATACACGTGCTCACCACCAATGTCTGGTAACACCCGCGCATACCTCACTCTCAACAGCTTTGAGGCAGGCGGTGACGGAGGAGGCCCATCTGAATGTGATGGCAAGTACCACAATGACAACACTCCGGTTGTGGCATTATCTACCGGATGGTATAATGGTGGATCAAGGTGCCTTAACAACATTAGAATTAATGGAAATGGGCGCAGTGTAGTGGCCAAGGTGGTGGATGAGTGTGACTCAACTGAGGGATGTGATGCGGACCATGATTATCATCCTCCTTGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTAGGTATCTCGTTTCCCGGCACTCTCGATATGCCGGAACTGAATTCAAGCGATGACTCGACTCTCAGCCTTGTCAACGTCACCGCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

20.82

Weight (kDa)

4.97

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 15 - 170 5.1e-63 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 200
AccII CGCG 1 cut(s) 213
AciI CCGC 4 cut(s) 211, 246, 434, 585
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 544
AcvI CACGTG 1 cut(s) 183
AfaI GTAC 2 cut(s) 170, 284
AfiI CCNNNNNNNGG 3 cut(s) 18, 116, 200
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 549
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 68, 158, 234
AluI AGCT 3 cut(s) 68, 158, 234
Alw21I GWGCWC 1 cut(s) 188
AlwI GGATC 1 cut(s) 346
AoxI GGCC 2 cut(s) 259, 390
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 544
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 2 cut(s) 215, 381
AspS9I GGNCC 2 cut(s) 260, 436
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 180, 260, 574
AvaII GGWCC 1 cut(s) 436
AxyI CCTNAGG 1 cut(s) 502
BalI TGGCCA 1 cut(s) 392
BanI GGYRCC 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 137
BccI CCATC 3 cut(s) 269, 271, 318
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 519
BfaI CTAG 1 cut(s) 29
BglI GCCNNNNNGGC 1 cut(s) 485
BisI GCNGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 117, 519
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 260, 436
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 117, 519
BmsI GCATC 2 cut(s) 421, 466
BplI GAGNNNNNCTC 4 cut(s) 125, 157, 398, 430
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 393, 483
BsaWI WCCGGW 2 cut(s) 301, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 116, 200
Bse21I CCTNAGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 393, 483
BseGI GGATG 5 cut(s) 142, 329, 409, 431, 448
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 18, 116, 200
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 3 cut(s) 83, 411, 580
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 261, 392
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 4 cut(s) 302, 321, 519, 536
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 18, 116, 200
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 2 cut(s) 261, 392
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 338
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 4 cut(s) 211, 246, 434, 585
BspANI GGCC 2 cut(s) 261, 392
BspCNI CTCAG 3 cut(s) 82, 412, 579
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 393, 483
BssMI GATC 1 cut(s) 338
BssT1I CCWWGG 2 cut(s) 393, 483
Bst2UI CCWGG 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 4 cut(s) 69, 420, 502, 566
BstF5I GGATG 5 cut(s) 142, 329, 409, 431, 448
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 215, 381
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 517
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 502
BsuRI GGCC 2 cut(s) 261, 392
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 5 cut(s) 142, 329, 409, 431, 448
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 2 cut(s) 215, 381
Cfr13I GGNCC 2 cut(s) 260, 436
Csp6I GTAC 2 cut(s) 169, 283
CviAII CATG 1 cut(s) 440
CviJI RGCY 9 cut(s) 68, 109, 158, 234, 261, 392, 488, 500, 570
CviKI_1 RGCY 9 cut(s) 68, 109, 158, 234, 261, 392, 488, 500, 570
CviQI GTAC 2 cut(s) 169, 283
DdeI CTNAG 4 cut(s) 69, 420, 502, 566
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 393, 483
Eco47I GGWCC 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 393, 483
ErhI CCWWGG 2 cut(s) 393, 483
FaeI CATG 1 cut(s) 443
FaiI YATR 5 cut(s) 178, 217, 330, 441, 533
FaqI GGGAC 1 cut(s) 444
FatI CATG 1 cut(s) 439
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 5 cut(s) 149, 336, 416, 435, 438
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 214, 380
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 261, 392
HapII CCGG 4 cut(s) 302, 321, 519, 536
HhaI GCGC 2 cut(s) 215, 381
Hin1II CATG 1 cut(s) 443
Hin6I GCGC 2 cut(s) 213, 379
HinP1I GCGC 2 cut(s) 213, 379
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 140, 413, 557, 562
HpaII CCGG 4 cut(s) 302, 321, 519, 536
HphI GGTGA 3 cut(s) 180, 260, 574
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 2 cut(s) 145, 268
Hpy188III TCNNGA 2 cut(s) 493, 527
Hpy8I GTNNAC 1 cut(s) 577
HpyAV CCTTC 1 cut(s) 84
HpyCH4IV ACGT 2 cut(s) 182, 579
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 4 cut(s) 69, 420, 502, 566
HpySE526I ACGT 2 cut(s) 182, 579
Hsp92II CATG 1 cut(s) 443
HspAI GCGC 2 cut(s) 213, 379
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 421, 466
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 182, 579
MaeIII GTNAC 5 cut(s) 125, 203, 248, 410, 580
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 3 cut(s) 48, 363, 544
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 4 cut(s) 134, 407, 551, 556
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 2 cut(s) 351, 366
MslI CAYNNNNRTG 2 cut(s) 181, 268
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 4 cut(s) 302, 321, 519, 536
MspR9I CCNGG 2 cut(s) 117, 519
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 485
NciI CCSGG 1 cut(s) 519
NdeII GATC 1 cut(s) 338
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 3 cut(s) 248, 410, 580
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 4 cut(s) 134, 407, 551, 556
PmaCI CACGTG 1 cut(s) 183
PmlI CACGTG 1 cut(s) 183
PpsI GAGTC 4 cut(s) 134, 407, 551, 556
Ppu21I YACGTR 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 115
PspCI CACGTG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 260, 436
RsaI GTAC 2 cut(s) 170, 284
RsaNI GTAC 2 cut(s) 169, 283
RseI CAYNNNNRTG 2 cut(s) 181, 268
SaqAI TTAA 2 cut(s) 351, 366
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 2 cut(s) 260, 436
SchI GAGTC 4 cut(s) 134, 407, 551, 556
ScrFI CCNGG 2 cut(s) 117, 519
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 70, 160, 185, 222, 236, 347, 399, 508, 582
SfaNI GCATC 2 cut(s) 421, 466
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 181, 268
Sse9I AATT 3 cut(s) 48, 363, 544
SsiI CCGC 4 cut(s) 211, 246, 434, 585
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 115, 517
StyI CCWWGG 2 cut(s) 393, 483
TaiI ACGT 2 cut(s) 185, 582
TaqI TCGA 2 cut(s) 528, 560
TasI AATT 3 cut(s) 48, 363, 544
Tru1I TTAA 2 cut(s) 351, 366
Tru9I TTAA 2 cut(s) 351, 366
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 3 cut(s) 248, 410, 580
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 3 cut(s) 248, 410, 580
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 544
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.