RchiOBHm_Chr7g0232891

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000242
Physical Location & Seq
Reverse (-)
57075288 .. 57075560
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20874

Sequence Viewer

Length: 273 bp
ATGTACCCAACATACACGTGCTCACCACCAATGTCTGGTAACACCCAGCCATACCTCACTCTCAACAGCTTTGAGGAAGGTGGTGACGGAGGAGGCCCATCTGAATGTGATGGCAAGTACCACAATGACAAAATTCCAGTTGTGGCATTATCTACCGGATGGTATAATGGTGGATCAAGATGCCTTAACAACATCAGAATTAATGGAAATGGGCGCAGTGTAGTGGCTATGGTGGTGGATGAGTGTGACTCCTTGTCCCAACAACATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.75

Weight (kDa)

4.78

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 84 3e-33 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 132
AcvI CACGTG 1 cut(s) 18
AfaI GTAC 2 cut(s) 5, 119
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 253
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw21I GWGCWC 1 cut(s) 23
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 132
AseI ATTAAT 1 cut(s) 201
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 15, 95
BbrPI CACGTG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 3 cut(s) 104, 106, 153
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 95
BmsI GCATC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaAI YACGTR 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 164, 244
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 173
BspANI GGCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 137
BssMI GATC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 18
BstF5I GGATG 2 cut(s) 164, 244
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 164, 244
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 4, 118
CviJI RGCY 4 cut(s) 49, 69, 96, 227
CviKI_1 RGCY 4 cut(s) 49, 69, 96, 227
CviQI GTAC 2 cut(s) 4, 118
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
DriI GACNNNNNGTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 253
Eco72I CACGTG 1 cut(s) 18
FaiI YATR 4 cut(s) 13, 52, 165, 230
FaqI GGGAC 1 cut(s) 241
FokI GGATG 2 cut(s) 171, 251
GlaI GCGC 1 cut(s) 215
GsaI CCCAGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 216
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 15, 95
Hpy188I TCNGA 2 cut(s) 103, 197
Hpy188III TCNNGA 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 17
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 21, 59, 150, 169
LweI GCATC 1 cut(s) 170
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 38, 83, 245
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 132, 198
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 4 cut(s) 65, 67, 83, 86
MseI TTAA 2 cut(s) 186, 201
MslI CAYNNNNRTG 2 cut(s) 16, 103
MspI CCGG 1 cut(s) 156
NdeII GATC 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 83, 245
PflMI CCANNNNNTGG 1 cut(s) 35
PleI GAGTC 1 cut(s) 242
PmaCI CACGTG 1 cut(s) 18
PmlI CACGTG 1 cut(s) 18
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 201
PspCI CACGTG 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 95
RsaI GTAC 2 cut(s) 5, 119
RsaNI GTAC 2 cut(s) 4, 118
RseI CAYNNNNRTG 2 cut(s) 16, 103
SaqAI TTAA 2 cut(s) 186, 201
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 20, 57, 71, 82
SfaNI GCATC 1 cut(s) 170
SgeI CNNG 9 cut(s) 28, 30, 48, 58, 127, 149, 168, 189, 265
SmiMI CAYNNNNRTG 2 cut(s) 16, 103
Sse9I AATT 2 cut(s) 132, 198
TaiI ACGT 1 cut(s) 20
TasI AATT 2 cut(s) 132, 198
Tru1I TTAA 2 cut(s) 186, 201
Tru9I TTAA 2 cut(s) 186, 201
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 83, 245
Tsp45I GTSAC 2 cut(s) 83, 245
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 35
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.