RLG00000028668

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
25924263 .. 25924719
457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028668

Sequence Viewer

Length: 375 bp
ATGGTTAGAGGAAAGCAATCTCCTCCTGGACCATGCGACCAGGGTGGAGACACCGACTGCTGTAAAGCAGGAAAAAATGTACCCAACCTATCATTGCTCACCACCGGTGTCCAAACACGCCAAGGCCTATCTTACTCTGGACAGCTTAATGGTGGAGTTACTCCATCGACATGTGACAATCGATATCATTCCAACGAGACACTAGTCGTGGCGTTATCCACCGGGTGGTTTAACAATGGAGGAAGTGACGTGGACAATGACTTCCAGCCTCCTTGTGCTAATAATGTTGTTGATGCCTCGAAGGCTGTTCGGGAAGCATTAGGTGTGCCTCATGGCGATTGGGATGGTTTATACATTACCTGGTCGAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.04

Weight (kDa)

4.81

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 81 - 123 4.4e-07 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 225
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 104
AhlI ACTAGT 1 cut(s) 202
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 3 cut(s) 25, 39, 359
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 42, 191
AoxI GGCC 1 cut(s) 124
AsiGI ACCGGT 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 29
BccI CCATC 2 cut(s) 172, 338
BciT130I CCWGG 3 cut(s) 27, 41, 361
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 42, 191
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 302
Bme1390I CCNGG 4 cut(s) 27, 41, 223, 361
Bme18I GGWCC 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 4 cut(s) 27, 41, 223, 361
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 40, 121
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 92
BseBI CCWGG 3 cut(s) 27, 41, 361
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 40, 121
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 12
BshFI GGCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 181
BsiSI CCGG 2 cut(s) 105, 222
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 42, 191
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 126
BspANI GGCC 1 cut(s) 126
BspDI ATCGAT 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 40, 121
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 27, 41, 361
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 42, 191
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 3 cut(s) 27, 41, 361
BstNSI RCATGY 1 cut(s) 174
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 4 cut(s) 25, 39, 221, 359
Bsu15I ATCGAT 1 cut(s) 181
BsuRI GGCC 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 181
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 359
Csp6I GTAC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 3 cut(s) 33, 171, 332
CviJI RGCY 4 cut(s) 126, 145, 268, 305
CviKI_1 RGCY 4 cut(s) 126, 145, 268, 305
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 372
DraIII CACNNNGTG 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 126
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 29
EcoRII CCWGG 3 cut(s) 25, 39, 359
EcoRV GATATC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 36, 174, 335
FaiI YATR 4 cut(s) 34, 172, 333, 352
FatI CATG 3 cut(s) 32, 170, 331
FokI GGATG 1 cut(s) 356
FspBI CTAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 105, 222
Hin1II CATG 3 cut(s) 36, 174, 335
HpaII CCGG 2 cut(s) 105, 222
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 138, 311
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 36, 174, 335
LweI GCATC 1 cut(s) 283
MabI ACCWGGT 1 cut(s) 359
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 157, 173, 245
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 5 cut(s) 33, 233, 279, 307, 339
MseI TTAA 2 cut(s) 147, 231
MslI CAYNNNNRTG 1 cut(s) 169
MspI CCGG 2 cut(s) 105, 222
MspR9I CCNGG 4 cut(s) 27, 41, 223, 361
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 3 cut(s) 27, 41, 361
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 223
NlaIII CATG 3 cut(s) 36, 174, 335
NmuCI GTSAC 2 cut(s) 173, 245
NspI RCATGY 1 cut(s) 174
PceI AGGCCT 1 cut(s) 126
PciI ACATGT 1 cut(s) 170
PctI GAATGC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 104
PscI ACATGT 1 cut(s) 170
PshAI GACNNNNGTC 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 25, 39, 359
PspGI CCWGG 3 cut(s) 25, 39, 359
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 147, 231
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 27, 41, 223, 361
SetI ASST 5 cut(s) 90, 147, 252, 325, 362
SexAI ACCWGGT 1 cut(s) 359
SfaNI GCATC 1 cut(s) 283
SgrAI CRCCGGYG 1 cut(s) 104
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 169
SpeI ACTAGT 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 126
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 4 cut(s) 25, 39, 221, 359
StyI CCWWGG 1 cut(s) 121
TaiI ACGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 167, 181, 299, 365
Tru1I TTAA 2 cut(s) 147, 231
Tru9I TTAA 2 cut(s) 147, 231
TseFI GTSAC 2 cut(s) 173, 245
Tsp45I GTSAC 2 cut(s) 173, 245
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 29
XceI RCATGY 1 cut(s) 174
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.