MD07G1139800.v1.1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000242
Physical Location & Seq
Forward (+)
20302904 .. 20303476
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1139800.v1.1.491

Sequence Viewer

Length: 573 bp
ATGAATAACAAGATGTTTTCAGGTTCTTTTTTCTTCATCTTAATCATTCTTGCTACGAACTGGTTGAGCATTGAAGCTCAAAAATGCAAGCCTAGTGGCAAGCTTAGGGGGAAAGAGCCTCCTCCAGGACAATGTAACCAAGGGAATGACTCCGAGTGCTGCAAAAAAGGCAAGCTTTACCCCACCTACACGTGCTCACCTCAGGTGTCTAAGAAAACGAAAGCAACCTTGACCATCAACAGCTTTCAAAAGGGTGGTGATGGTGGCGGTCCATCAGCATGTGACAATAAGTTCCACTCGGATAAGAGTCCTGTTGTGGCATTGTCGACAGGCTGGTACAACAAAGGGAACCGGTGTTTAGGCCATATTACCATCCATGGTAATGGAAGGAGTGTCAAAGCGATGGTTGTCGACGAGTGCGACTCCACAGTAGGATGTGATGCCGAGCACGATTACCAGCCTCCATGTGCTAACAATTTGGTTGACGCCTCTAAAGCTGTTTGGAAGGCCTTGGGAGTGTCAGAAAGTGACCCAAAATGGGGTTTTATGGATATATTCTGGTCTGATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.59

Weight (kDa)

8.49

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 26 - 190 1.2e-63 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 326, 411
AciI CCGC 1 cut(s) 267
AcvI CACGTG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 125, 538, 539
AflIII ACRYGT 1 cut(s) 189
AgeI ACCGGT 1 cut(s) 351
AgsI TTSAA 2 cut(s) 74, 248
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 5 cut(s) 77, 103, 175, 243, 497
AluI AGCT 5 cut(s) 77, 103, 175, 243, 497
Alw21I GWGCWC 2 cut(s) 197, 450
AoxI GGCC 2 cut(s) 361, 507
ApeKI GCWGC 1 cut(s) 159
AsiGI ACCGGT 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 189, 269
AvaII GGWCC 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 201
BbrPI CACGTG 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 197, 450
BbvI GCAGC 1 cut(s) 146
BccI CCATC 5 cut(s) 242, 254, 280, 380, 397
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 430, 556
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 139, 376, 510
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 538, 539
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 65
Bse21I CCTNAGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 139, 376, 510
BseGI GGATG 2 cut(s) 372, 440
BseLI CCNNNNNNNGG 3 cut(s) 125, 538, 539
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 363, 509
BshTI ACCGGT 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 197, 450
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 125, 538, 539
BsnI GGCC 2 cut(s) 363, 509
Bsp1286I GDGCHC 2 cut(s) 197, 450
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 363, 509
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 139, 376, 510
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 3 cut(s) 139, 376, 510
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 486
BstBAI YACGTR 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 89, 101, 173
BstDEI CTNAG 3 cut(s) 104, 201, 210
BstDSI CCRYGG 1 cut(s) 376
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 372, 440
BstMWI GCNNNNNNNGC 2 cut(s) 168, 494
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 383
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 363, 509
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 2 cut(s) 372, 440
Cac8I GCNNGC 3 cut(s) 89, 101, 173
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 337
CspAI ACCGGT 1 cut(s) 351
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 279, 377, 465
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 104, 201, 210
Eco130I CCWWGG 3 cut(s) 139, 376, 510
Eco147I AGGCCT 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 139, 376, 510
ErhI CCWWGG 3 cut(s) 139, 376, 510
FaeI CATG 3 cut(s) 282, 380, 468
FaiI YATR 6 cut(s) 280, 366, 378, 466, 548, 554
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 3 cut(s) 278, 376, 464
FblI GTMKAC 2 cut(s) 326, 411
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 359, 447
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 2 cut(s) 363, 509
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 3 cut(s) 282, 380, 468
HincII GTYRAC 3 cut(s) 327, 412, 484
HindII GTYRAC 3 cut(s) 327, 412, 484
HindIII AAGCTT 2 cut(s) 101, 173
HinfI GANTC 3 cut(s) 149, 307, 422
HpaII CCGG 1 cut(s) 352
HphI GGTGA 2 cut(s) 189, 269
Hpy166II GTNNAC 3 cut(s) 327, 412, 484
Hpy188I TCNGA 4 cut(s) 154, 301, 523, 565
Hpy8I GTNNAC 3 cut(s) 327, 412, 484
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 381, 499
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 87, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 494
HpyF3I CTNAG 3 cut(s) 104, 201, 210
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 3 cut(s) 282, 380, 468
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 430, 556
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 134, 281, 527
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 197, 450
MluCI AATT 1 cut(s) 475
MlyI GAGTC 3 cut(s) 143, 316, 416
MnlI CCTC 5 cut(s) 129, 132, 210, 471, 499
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 277, 381
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 168, 494
NcoI CCATGG 1 cut(s) 376
NlaIII CATG 3 cut(s) 282, 380, 468
NlaIV GGNNCC 1 cut(s) 350
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 2 cut(s) 281, 527
NspI RCATGY 1 cut(s) 282
PceI AGGCCT 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 3 cut(s) 143, 315, 416
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
PpsI GAGTC 3 cut(s) 143, 315, 416
Ppu21I YACGTR 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 124
PspCI CACGTG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 2 cut(s) 277, 381
SalI GTCGAC 2 cut(s) 325, 410
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 3 cut(s) 143, 316, 416
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 197, 450
SfaNI GCATC 2 cut(s) 430, 556
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 277, 381
Sse9I AATT 1 cut(s) 475
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 93
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 3 cut(s) 139, 376, 510
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 326, 411
TasI AATT 1 cut(s) 475
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 2 cut(s) 281, 527
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 2 cut(s) 281, 527
TspDTI ATGAA 2 cut(s) 17, 25
VpaK11BI GGWCC 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 123
XceI RCATGY 1 cut(s) 282
XmiI GTMKAC 2 cut(s) 326, 411
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.