Ripening-related protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MTPAP-like_central | PF22600 | 1218 - 1314 | 1.9e-07 | Poly(A) RNA polymerase, mitochondrial-like, central palm domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1410, 2673, 3938 |
| AarI | CACCTGC | 1 cut(s) | 2257 |
| Acc16I | TGCGCA | 2 cut(s) | 953, 2566 |
| Acc36I | ACCTGC | 2 cut(s) | 1036, 2257 |
| AccB1I | GGYRCC | 1 cut(s) | 4012 |
| AccI | GTMKAC | 1 cut(s) | 389 |
| AccII | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| AccIII | TCCGGA | 1 cut(s) | 3493 |
| AcoI | YGGCCR | 7 cut(s) | 259, 735, 2198, 3077, 3176, 3383, 4354 |
| AcuI | CTGAAG | 7 cut(s) | 801, 881, 1052, 1965, 3393, 3497, 3836 |
| AcvI | CACGTG | 1 cut(s) | 3479 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 643, 3075, 3699, 4237 |
| AflII | CTTAAG | 1 cut(s) | 3905 |
| AgeI | ACCGGT | 1 cut(s) | 636 |
| AhlI | ACTAGT | 2 cut(s) | 2599, 3746 |
| AjnI | CCWGG | 4 cut(s) | 2944, 3678, 3698, 3863 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3262, 3294, 4238, 4270 |
| AleI | CACNNNNGTG | 1 cut(s) | 4053 |
| Alw21I | GWGCWC | 2 cut(s) | 2422, 4050 |
| Alw26I | GTCTC | 6 cut(s) | 2473, 2973, 3096, 3633, 3678, 3836 |
| Alw44I | GTGCAC | 1 cut(s) | 4046 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1943, 2622 |
| Ama87I | CYCGRG | 2 cut(s) | 3247, 4681 |
| Aor13HI | TCCGGA | 1 cut(s) | 3493 |
| ApaLI | GTGCAC | 1 cut(s) | 4046 |
| ApeKI | GCWGC | 8 cut(s) | 350, 833, 1547, 1682, 2956, 3114, 3860, 4488 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 971, 1003, 3719, 3751 |
| AsiGI | ACCGGT | 1 cut(s) | 636 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1127, 2115, 4250 |
| AspA2I | CCTAGG | 2 cut(s) | 134, 3164 |
| AspLEI | GCGC | 7 cut(s) | 722, 731, 954, 2567, 3114, 3156, 3212 |
| AspS9I | GGNCC | 9 cut(s) | 138, 327, 1314, 1796, 2128, 2400, 2442, 3690, 3757 |
| AsuC2I | CCSGG | 2 cut(s) | 2202, 2725 |
| AsuII | TTCGAA | 2 cut(s) | 674, 2413 |
| AvaI | CYCGRG | 2 cut(s) | 3247, 4681 |
| AvaII | GGWCC | 7 cut(s) | 138, 327, 1314, 1796, 2128, 2442, 3757 |
| AvrII | CCTAGG | 2 cut(s) | 134, 3164 |
| BaeGI | GKGCMC | 2 cut(s) | 4050, 4094 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4550, 4583 |
| BalI | TGGCCA | 1 cut(s) | 3385 |
| BanI | GGYRCC | 1 cut(s) | 4012 |
| BanII | GRGCYC | 1 cut(s) | 2167 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3339, 3371 |
| BbrPI | CACGTG | 1 cut(s) | 3479 |
| BbsI | GAAGAC | 3 cut(s) | 558, 1971, 3050 |
| Bbv12I | GWGCWC | 2 cut(s) | 2422, 4050 |
| BbvI | GCAGC | 8 cut(s) | 337, 845, 1534, 1669, 2943, 3126, 3847, 4500 |
| BccI | CCATC | 9 cut(s) | 152, 370, 1835, 1955, 2019, 3238, 3323, 3359, 4168 |
| BceAI | ACGGC | 4 cut(s) | 185, 274, 280, 1281 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3922, 3956 |
| BciT130I | CCWGG | 4 cut(s) | 2946, 3680, 3700, 3865 |
| BciVI | GTATCC | 1 cut(s) | 4551 |
| BclI | TGATCA | 4 cut(s) | 1693, 2716, 3121, 3481 |
| BcnI | CCSGG | 2 cut(s) | 2202, 2725 |
| BcoDI | GTCTC | 6 cut(s) | 2473, 2973, 3096, 3633, 3678, 3836 |
| BcuI | ACTAGT | 2 cut(s) | 2599, 3746 |
| BfmI | CTRYAG | 1 cut(s) | 1132 |
| BfoI | RGCGCY | 1 cut(s) | 723 |
| BfrI | CTTAAG | 1 cut(s) | 3905 |
| BfuAI | ACCTGC | 2 cut(s) | 1036, 2257 |
| BfuI | GTATCC | 1 cut(s) | 4551 |
| BlnI | CCTAGG | 2 cut(s) | 134, 3164 |
| BmcAI | AGTACT | 1 cut(s) | 4024 |
| Bme1390I | CCNGG | 6 cut(s) | 2202, 2725, 2946, 3680, 3700, 3865 |
| Bme18I | GGWCC | 7 cut(s) | 138, 327, 1314, 1796, 2128, 2442, 3757 |
| BmeT110I | CYCGRG | 2 cut(s) | 3247, 4681 |
| BmgT120I | GGNCC | 9 cut(s) | 138, 327, 1314, 1796, 2128, 2400, 2442, 3690, 3757 |
| BmiI | GGNNCC | 8 cut(s) | 268, 1316, 2166, 2402, 2433, 3323, 3795, 4014 |
| BmrFI | CCNGG | 6 cut(s) | 2202, 2725, 2946, 3680, 3700, 3865 |
| BmrI | ACTGGG | 1 cut(s) | 3313 |
| BmuI | ACTGGG | 1 cut(s) | 3313 |
| BpiI | GAAGAC | 3 cut(s) | 558, 1971, 3050 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1179, 1211, 2987, 3019 |
| BpmI | CTGGAG | 3 cut(s) | 3662, 4036, 4319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1036 |
| Bpu14I | TTCGAA | 2 cut(s) | 674, 2413 |
| BpuEI | CTTGAG | 3 cut(s) | 1615, 2009, 4315 |
| BpuMI | CCSGG | 2 cut(s) | 2202, 2725 |
| Bsa29I | ATCGAT | 1 cut(s) | 2260 |
| BsaAI | YACGTR | 1 cut(s) | 3479 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2673 |
| BsaI | GGTCTC | 1 cut(s) | 3678 |
| BsaWI | WCCGGW | 3 cut(s) | 636, 2439, 3493 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 643, 3075, 3699, 4237 |
| Bse118I | RCCGGY | 2 cut(s) | 636, 3187 |
| Bse3DI | GCAATG | 4 cut(s) | 811, 2349, 2378, 3056 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2673 |
| BseAI | TCCGGA | 1 cut(s) | 3493 |
| BseBI | CCWGG | 4 cut(s) | 2946, 3680, 3700, 3865 |
| BseCI | ATCGAT | 1 cut(s) | 2260 |
| BseJI | GATNNNNATC | 1 cut(s) | 2673 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 643, 3075, 3699, 4237 |
| BseMI | GCAATG | 4 cut(s) | 811, 2349, 2378, 3056 |
| BseMII | CTCAG | 9 cut(s) | 59, 123, 533, 644, 1935, 2352, 2622, 3513, 4197 |
| BseRI | GAGGAG | 5 cut(s) | 151, 215, 218, 443, 1612 |
| BseSI | GKGCMC | 2 cut(s) | 4050, 4094 |
| BseXI | GCAGC | 8 cut(s) | 337, 845, 1534, 1669, 2943, 3126, 3847, 4500 |
| BseYI | CCCAGC | 2 cut(s) | 1006, 3809 |
| BsgI | GTGCAG | 2 cut(s) | 1201, 3417 |
| Bsh1236I | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2260, 3160 |
| BshNI | GGYRCC | 1 cut(s) | 4012 |
| BshTI | ACCGGT | 1 cut(s) | 636 |
| BshVI | ATCGAT | 1 cut(s) | 2260 |
| BsiEI | CGRYCG | 2 cut(s) | 2260, 3160 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2422, 4050 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3247, 4681 |
| BsiSI | CCGG | 8 cut(s) | 297, 330, 637, 2201, 2440, 2724, 3188, 3494 |
| BslFI | GGGAC | 4 cut(s) | 1300, 2740, 3188, 3721 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 643, 3075, 3699, 4237 |
| BsmAI | GTCTC | 6 cut(s) | 2473, 2973, 3096, 3633, 3678, 3836 |
| BsmFI | GGGAC | 4 cut(s) | 1300, 2740, 3188, 3721 |
| BsmI | GAATGC | 1 cut(s) | 1827 |
| Bso31I | GGTCTC | 1 cut(s) | 3678 |
| BsoBI | CYCGRG | 2 cut(s) | 3247, 4681 |
| Bsp119I | TTCGAA | 2 cut(s) | 674, 2413 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2167, 2422, 4050, 4094 |
| Bsp13I | TCCGGA | 1 cut(s) | 3493 |
| Bsp1407I | TGTACA | 1 cut(s) | 1355 |
| Bsp19I | CCATGG | 1 cut(s) | 2532 |
| BspCNI | CTCAG | 9 cut(s) | 58, 122, 534, 645, 1936, 2351, 2623, 3514, 4198 |
| BspDI | ATCGAT | 1 cut(s) | 2260 |
| BspEI | TCCGGA | 1 cut(s) | 3493 |
| BspFNI | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| BspHI | TCATGA | 1 cut(s) | 850 |
| BspLI | GGNNCC | 8 cut(s) | 268, 1316, 2166, 2402, 2433, 3323, 3795, 4014 |
| BspMI | ACCTGC | 2 cut(s) | 1036, 2257 |
| BspT104I | TTCGAA | 2 cut(s) | 674, 2413 |
| BspT107I | GGYRCC | 1 cut(s) | 4012 |
| BspTI | CTTAAG | 1 cut(s) | 3905 |
| BspTNI | GGTCTC | 1 cut(s) | 3678 |
| BsrDI | GCAATG | 4 cut(s) | 811, 2349, 2378, 3056 |
| BsrFI | RCCGGY | 2 cut(s) | 636, 3187 |
| BsrGI | TGTACA | 1 cut(s) | 1355 |
| BssAI | RCCGGY | 2 cut(s) | 636, 3187 |
| BssT1I | CCWWGG | 6 cut(s) | 134, 1346, 1386, 2532, 3164, 3296 |
| Bst2UI | CCWGG | 4 cut(s) | 2946, 3680, 3700, 3865 |
| Bst6I | CTCTTC | 3 cut(s) | 3432, 4002, 4626 |
| BstAFI | CTTAAG | 1 cut(s) | 3905 |
| BstAUI | TGTACA | 1 cut(s) | 1355 |
| BstBAI | YACGTR | 1 cut(s) | 3479 |
| BstBI | TTCGAA | 2 cut(s) | 674, 2413 |
| BstDSI | CCRYGG | 4 cut(s) | 262, 723, 2532, 3912 |
| BstFNI | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| BstH2I | RGCGCY | 1 cut(s) | 723 |
| BstHHI | GCGC | 7 cut(s) | 722, 731, 954, 2567, 3114, 3156, 3212 |
| BstMAI | GTCTC | 6 cut(s) | 2473, 2973, 3096, 3633, 3678, 3836 |
| BstMCI | CGRYCG | 2 cut(s) | 2260, 3160 |
| BstNI | CCWGG | 4 cut(s) | 2946, 3680, 3700, 3865 |
| BstNSI | RCATGY | 3 cut(s) | 1514, 3849, 3860 |
| BstSCI | CCNGG | 6 cut(s) | 2200, 2723, 2944, 3678, 3698, 3863 |
| BstSFI | CTRYAG | 1 cut(s) | 1132 |
| BstSLI | GKGCMC | 2 cut(s) | 4050, 4094 |
| BstUI | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| BstV1I | GCAGC | 8 cut(s) | 337, 845, 1534, 1669, 2943, 3126, 3847, 4500 |
| BstV2I | GAAGAC | 3 cut(s) | 558, 1971, 3050 |
| BstX2I | RGATCY | 3 cut(s) | 1390, 3008, 3695 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 2138, 2915, 3303, 4376 |
| BstYI | RGATCY | 3 cut(s) | 1390, 3008, 3695 |
| Bsu15I | ATCGAT | 1 cut(s) | 2260 |
| BsuI | GTATCC | 1 cut(s) | 4551 |
| BsuTUI | ATCGAT | 1 cut(s) | 2260 |
| BtgI | CCRYGG | 4 cut(s) | 262, 723, 2532, 3912 |
| BtgZI | GCGATG | 1 cut(s) | 809 |
| BtsI | GCAGTG | 1 cut(s) | 2486 |
| BveI | ACCTGC | 2 cut(s) | 1036, 2257 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1943, 2622 |
| CciI | TCATGA | 1 cut(s) | 850 |
| CfoI | GCGC | 7 cut(s) | 722, 731, 954, 2567, 3114, 3156, 3212 |
| Cfr10I | RCCGGY | 2 cut(s) | 636, 3187 |
| Cfr13I | GGNCC | 9 cut(s) | 138, 327, 1314, 1796, 2128, 2400, 2442, 3690, 3757 |
| Cfr42I | CCGCGG | 1 cut(s) | 726 |
| ClaI | ATCGAT | 1 cut(s) | 2260 |
| CseI | GACGC | 2 cut(s) | 1688, 4551 |
| CspAI | ACCGGT | 1 cut(s) | 636 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 954, 989 |
| DraI | TTTAAA | 1 cut(s) | 1899 |
| EaeI | YGGCCR | 7 cut(s) | 259, 735, 2198, 3077, 3176, 3383, 4354 |
| Eam1104I | CTCTTC | 3 cut(s) | 3432, 4002, 4626 |
| EarI | CTCTTC | 3 cut(s) | 3432, 4002, 4626 |
| EciI | GGCGGA | 2 cut(s) | 209, 4274 |
| Eco130I | CCWWGG | 6 cut(s) | 134, 1346, 1386, 2532, 3164, 3296 |
| Eco147I | AGGCCT | 1 cut(s) | 1949 |
| Eco24I | GRGCYC | 1 cut(s) | 2167 |
| Eco31I | GGTCTC | 1 cut(s) | 3678 |
| Eco32I | GATATC | 3 cut(s) | 1075, 1089, 2628 |
| Eco47I | GGWCC | 7 cut(s) | 138, 327, 1314, 1796, 2128, 2442, 3757 |
| Eco57I | CTGAAG | 7 cut(s) | 801, 881, 1052, 1965, 3393, 3497, 3836 |
| Eco72I | CACGTG | 1 cut(s) | 3479 |
| Eco88I | CYCGRG | 2 cut(s) | 3247, 4681 |
| EcoO109I | RGGNCCY | 2 cut(s) | 138, 1314 |
| EcoRI | GAATTC | 1 cut(s) | 670 |
| EcoRII | CCWGG | 4 cut(s) | 2944, 3678, 3698, 3863 |
| EcoRV | GATATC | 3 cut(s) | 1075, 1089, 2628 |
| EcoT14I | CCWWGG | 6 cut(s) | 134, 1346, 1386, 2532, 3164, 3296 |
| EcoT22I | ATGCAT | 2 cut(s) | 3570, 4642 |
| EcoT38I | GRGCYC | 1 cut(s) | 2167 |
| ErhI | CCWWGG | 6 cut(s) | 134, 1346, 1386, 2532, 3164, 3296 |
| FaqI | GGGAC | 4 cut(s) | 1300, 2740, 3188, 3721 |
| FauI | CCCGC | 3 cut(s) | 44, 326, 718 |
| FauNDI | CATATG | 1 cut(s) | 2593 |
| FbaI | TGATCA | 4 cut(s) | 1693, 2716, 3121, 3481 |
| FblI | GTMKAC | 1 cut(s) | 389 |
| FriOI | GRGCYC | 1 cut(s) | 2167 |
| FspI | TGCGCA | 2 cut(s) | 953, 2566 |
| GlaI | GCGC | 7 cut(s) | 721, 730, 953, 2566, 3113, 3155, 3211 |
| GsaI | CCCAGC | 2 cut(s) | 1010, 3813 |
| GsuI | CTGGAG | 3 cut(s) | 3662, 4036, 4319 |
| HaeII | RGCGCY | 1 cut(s) | 723 |
| HapII | CCGG | 8 cut(s) | 297, 330, 637, 2201, 2440, 2724, 3188, 3494 |
| HgaI | GACGC | 2 cut(s) | 1688, 4551 |
| HhaI | GCGC | 7 cut(s) | 722, 731, 954, 2567, 3114, 3156, 3212 |
| Hin6I | GCGC | 7 cut(s) | 720, 729, 952, 2565, 3112, 3154, 3210 |
| HinP1I | GCGC | 7 cut(s) | 720, 729, 952, 2565, 3112, 3154, 3210 |
| HincII | GTYRAC | 2 cut(s) | 390, 2233 |
| HindII | GTYRAC | 2 cut(s) | 390, 2233 |
| HindIII | AAGCTT | 4 cut(s) | 621, 1641, 3348, 4587 |
| HpaI | GTTAAC | 1 cut(s) | 2233 |
| HpaII | CCGG | 8 cut(s) | 297, 330, 637, 2201, 2440, 2724, 3188, 3494 |
| Hpy166II | GTNNAC | 9 cut(s) | 390, 769, 2104, 2233, 2484, 3356, 3757, 4031, 4048 |
| Hpy8I | GTNNAC | 9 cut(s) | 390, 769, 2104, 2233, 2484, 3356, 3757, 4031, 4048 |
| Hpy99I | CGWCG | 3 cut(s) | 206, 409, 3187 |
| HpyCH4IV | ACGT | 3 cut(s) | 3021, 3478, 3990 |
| HpySE526I | ACGT | 3 cut(s) | 3021, 3478, 3990 |
| HspAI | GCGC | 7 cut(s) | 720, 729, 952, 2565, 3112, 3154, 3210 |
| Kpn2I | TCCGGA | 1 cut(s) | 3493 |
| Ksp22I | TGATCA | 4 cut(s) | 1693, 2716, 3121, 3481 |
| KspAI | GTTAAC | 1 cut(s) | 2233 |
| KspI | CCGCGG | 1 cut(s) | 726 |
| LmnI | GCTCC | 9 cut(s) | 243, 252, 272, 801, 916, 2170, 2437, 3217, 3332 |
| Lsp1109I | GCAGC | 8 cut(s) | 337, 845, 1534, 1669, 2943, 3126, 3847, 4500 |
| MaeII | ACGT | 3 cut(s) | 3021, 3478, 3990 |
| MfeI | CAATTG | 2 cut(s) | 3646, 4546 |
| MflI | RGATCY | 3 cut(s) | 1390, 3008, 3695 |
| MhlI | GDGCHC | 4 cut(s) | 2167, 2422, 4050, 4094 |
| MlsI | TGGCCA | 1 cut(s) | 3385 |
| MluNI | TGGCCA | 1 cut(s) | 3385 |
| MlyI | GAGTC | 9 cut(s) | 56, 365, 374, 385, 395, 1442, 1490, 2365, 3239 |
| MmeI | TCCRAC | 9 cut(s) | 348, 549, 1510, 2606, 3293, 3563, 3767, 4519, 4550 |
| Mox20I | TGGCCA | 1 cut(s) | 3385 |
| Mph1103I | ATGCAT | 2 cut(s) | 3570, 4642 |
| MroI | TCCGGA | 1 cut(s) | 3493 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1127, 2115, 4250 |
| MscI | TGGCCA | 1 cut(s) | 3385 |
| MslI | CAYNNNNRTG | 6 cut(s) | 911, 1082, 2271, 3495, 4053, 4509 |
| Msp20I | TGGCCA | 1 cut(s) | 3385 |
| MspA1I | CMGCKG | 4 cut(s) | 725, 1547, 2497, 4189 |
| MspCI | CTTAAG | 1 cut(s) | 3905 |
| MspI | CCGG | 8 cut(s) | 297, 330, 637, 2201, 2440, 2724, 3188, 3494 |
| MspR9I | CCNGG | 6 cut(s) | 2202, 2725, 2946, 3680, 3700, 3865 |
| MunI | CAATTG | 2 cut(s) | 3646, 4546 |
| Mva1269I | GAATGC | 1 cut(s) | 1827 |
| MvaI | CCWGG | 4 cut(s) | 2946, 3680, 3700, 3865 |
| MvnI | CGCG | 4 cut(s) | 725, 731, 3156, 3210 |
| NciI | CCSGG | 2 cut(s) | 2202, 2725 |
| NcoI | CCATGG | 1 cut(s) | 2532 |
| NdeI | CATATG | 1 cut(s) | 2593 |
| NlaIV | GGNNCC | 8 cut(s) | 268, 1316, 2166, 2402, 2433, 3323, 3795, 4014 |
| NmeAIII | GCCGAG | 2 cut(s) | 379, 4408 |
| NmuCI | GTSAC | 6 cut(s) | 463, 811, 1468, 2612, 2618, 3238 |
| NsbI | TGCGCA | 2 cut(s) | 953, 2566 |
| NsiI | ATGCAT | 2 cut(s) | 3570, 4642 |
| NspI | RCATGY | 3 cut(s) | 1514, 3849, 3860 |
| NspV | TTCGAA | 2 cut(s) | 674, 2413 |
| OliI | CACNNNNGTG | 1 cut(s) | 4053 |
| PaeI | GCATGC | 1 cut(s) | 3860 |
| PaeR7I | CTCGAG | 1 cut(s) | 3247 |
| PagI | TCATGA | 1 cut(s) | 850 |
| PaqCI | CACCTGC | 1 cut(s) | 2257 |
| PceI | AGGCCT | 1 cut(s) | 1949 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 2419, 3214, 4435 |
| PctI | GAATGC | 1 cut(s) | 1827 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1127, 2115, 4250 |
| PfoI | TCCNGGA | 1 cut(s) | 3698 |
| PinAI | ACCGGT | 1 cut(s) | 636 |
| Ple19I | CGATCG | 2 cut(s) | 2260, 3160 |
| PleI | GAGTC | 9 cut(s) | 56, 364, 373, 385, 394, 1441, 1489, 2365, 3239 |
| PmaCI | CACGTG | 1 cut(s) | 3479 |
| PmlI | CACGTG | 1 cut(s) | 3479 |
| PpsI | GAGTC | 9 cut(s) | 56, 364, 373, 385, 394, 1441, 1489, 2365, 3239 |
| Ppu21I | YACGTR | 1 cut(s) | 3479 |
| PpuMI | RGGWCCY | 2 cut(s) | 138, 1314 |
| PsiI | TTATAA | 3 cut(s) | 1410, 2673, 3938 |
| Psp5II | RGGWCCY | 2 cut(s) | 138, 1314 |
| Psp6I | CCWGG | 4 cut(s) | 2944, 3678, 3698, 3863 |
| PspCI | CACGTG | 1 cut(s) | 3479 |
| PspFI | CCCAGC | 2 cut(s) | 1006, 3809 |
| PspGI | CCWGG | 4 cut(s) | 2944, 3678, 3698, 3863 |
| PspN4I | GGNNCC | 8 cut(s) | 268, 1316, 2166, 2402, 2433, 3323, 3795, 4014 |
| PspPI | GGNCC | 9 cut(s) | 138, 327, 1314, 1796, 2128, 2400, 2442, 3690, 3757 |
| PspPPI | RGGWCCY | 2 cut(s) | 138, 1314 |
| PspXI | VCTCGAGB | 1 cut(s) | 3247 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1943, 2622 |
| PsuI | RGATCY | 3 cut(s) | 1390, 3008, 3695 |
| PvuI | CGATCG | 2 cut(s) | 2260, 3160 |
| PvuII | CAGCTG | 2 cut(s) | 1547, 4189 |
| RseI | CAYNNNNRTG | 6 cut(s) | 911, 1082, 2271, 3495, 4053, 4509 |
| SacII | CCGCGG | 1 cut(s) | 726 |
| SalI | GTCGAC | 1 cut(s) | 388 |
| Sau96I | GGNCC | 9 cut(s) | 138, 327, 1314, 1796, 2128, 2400, 2442, 3690, 3757 |
| ScaI | AGTACT | 1 cut(s) | 4024 |
| SchI | GAGTC | 9 cut(s) | 56, 365, 374, 385, 395, 1442, 1490, 2365, 3239 |
| ScrFI | CCNGG | 6 cut(s) | 2202, 2725, 2946, 3680, 3700, 3865 |
| SduI | GDGCHC | 4 cut(s) | 2167, 2422, 4050, 4094 |
| SfcI | CTRYAG | 1 cut(s) | 1132 |
| Sfr274I | CTCGAG | 1 cut(s) | 3247 |
| Sfr303I | CCGCGG | 1 cut(s) | 726 |
| SfuI | TTCGAA | 2 cut(s) | 674, 2413 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3187 |
| SgrBI | CCGCGG | 1 cut(s) | 726 |
| SinI | GGWCC | 7 cut(s) | 138, 327, 1314, 1796, 2128, 2442, 3757 |
| SlaI | CTCGAG | 1 cut(s) | 3247 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 911, 1082, 2271, 3495, 4053, 4509 |
| SmlI | CTYRAG | 5 cut(s) | 1594, 1988, 3247, 3905, 4294 |
| SmoI | CTYRAG | 5 cut(s) | 1594, 1988, 3247, 3905, 4294 |
| SpeI | ACTAGT | 2 cut(s) | 2599, 3746 |
| SphI | GCATGC | 1 cut(s) | 3860 |
| SseBI | AGGCCT | 1 cut(s) | 1949 |
| SspI | AATATT | 1 cut(s) | 3400 |
| StuI | AGGCCT | 1 cut(s) | 1949 |
| StyD4I | CCNGG | 6 cut(s) | 2200, 2723, 2944, 3678, 3698, 3863 |
| StyI | CCWWGG | 6 cut(s) | 134, 1346, 1386, 2532, 3164, 3296 |
| TaiI | ACGT | 3 cut(s) | 3024, 3481, 3993 |
| TaqII | GACCGA | 1 cut(s) | 1651 |
| TatI | WGTACW | 6 cut(s) | 1355, 1397, 2483, 2700, 2840, 4022 |
| TauI | GCSGC | 8 cut(s) | 725, 734, 737, 3079, 3178, 3411, 3520, 4223 |
| TseFI | GTSAC | 6 cut(s) | 463, 811, 1468, 2612, 2618, 3238 |
| TseI | GCWGC | 8 cut(s) | 350, 833, 1547, 1682, 2956, 3114, 3860, 4488 |
| Tsp45I | GTSAC | 6 cut(s) | 463, 811, 1468, 2612, 2618, 3238 |
| TspGWI | ACGGA | 4 cut(s) | 2823, 3559, 3632, 4435 |
| Vha464I | CTTAAG | 1 cut(s) | 3905 |
| VneI | GTGCAC | 1 cut(s) | 4046 |
| VpaK11BI | GGWCC | 7 cut(s) | 138, 327, 1314, 1796, 2128, 2442, 3757 |
| XceI | RCATGY | 3 cut(s) | 1514, 3849, 3860 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 910 |
| XhoI | CTCGAG | 1 cut(s) | 3247 |
| XmaJI | CCTAGG | 2 cut(s) | 134, 3164 |
| XmiI | GTMKAC | 1 cut(s) | 389 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1127, 2115, 4250 |
| ZrmI | AGTACT | 1 cut(s) | 4024 |
| Zsp2I | ATGCAT | 2 cut(s) | 3570, 4642 |