RLG00000028217

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
20250276 .. 20250827
552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028217

Sequence Viewer

Length: 552 bp
ATGAAGAGCTTCTTCTCAACAGGGTCTATTATAGCCATTCTTCTTTTGGCAATTTTCTTGGTTAGTGAAGCTCAGCAATGTAGTTCAAGTGGTGAAATCATAGGAACTCCTGGACAATGTAACCAGGAGAATGGCGCCGAGTGCTGCGAAGACGGAAAGCCGTACCCAACATACACGTGCTCGCCACCTGTGTCCGGCAACACCCAGGCCAAACTCACTCTTAACAGCTTTGAAGATGGCGGTGATGGAGGAGGCCCATCCAAATGTGACAGCCAGTACCATGATGACAACACTCTAGTTGTGGCATTATCCACCGGATGGTATGACAATAATTCAAGGTGCCTTAAGAACATCACAATTAACGGTAATGGGATGAGTGTGGACGCCATGGTTGTGGATGAGTGTGACTCTACTAAAGGATGTGATGAAGAACATGATTATCAGCCTCCTTGTCATAACAACGTTGTTGATGCTTCCAAGGCTGTATGGGAAGCCTTGGGTGTGTCTGAAGACAAACAGGGTGATTTAGATATCACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.48

Weight (kDa)

4.09

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 16 - 183 1.4e-67 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 134, 339
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 177
AcyI GRCGYC 2 cut(s) 135, 384
AfaI GTAC 2 cut(s) 164, 278
AfiI CCNNNNNNNGG 2 cut(s) 194, 318
AflII CTTAAG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 87, 233, 336
AjnI CCWGG 3 cut(s) 109, 123, 204
AluBI AGCT 3 cut(s) 9, 71, 228
AluI AGCT 3 cut(s) 9, 71, 228
Alw21I GWGCWC 1 cut(s) 182
AoxI GGCC 2 cut(s) 207, 253
ApeKI GCWGC 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 104, 254, 533
BanI GGYRCC 2 cut(s) 134, 339
BbrPI CACGTG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 156, 516
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 131
BccI CCATC 4 cut(s) 230, 239, 265, 312
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 111, 125, 206
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 111, 125, 206
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 136, 341
BmrFI CCNGG 3 cut(s) 111, 125, 206
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 156, 516
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu1102I GCTNAGC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 177
BsaHI GRCGYC 2 cut(s) 135, 384
BsaJI CCNNGG 4 cut(s) 204, 387, 477, 495
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 318
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 3 cut(s) 111, 125, 206
BseDI CCNNGG 4 cut(s) 204, 387, 477, 495
BseGI GGATG 5 cut(s) 257, 323, 378, 403, 425
BseLI CCNNNNNNNGG 2 cut(s) 194, 318
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 209, 255
BshNI GGYRCC 2 cut(s) 134, 339
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 195, 315
BslI CCNNNNNNNGG 2 cut(s) 194, 318
BsnI GGCC 2 cut(s) 209, 255
Bsp1286I GDGCHC 1 cut(s) 182
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 209, 255
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 136, 341
BspT107I GGYRCC 2 cut(s) 134, 339
BspTI CTTAAG 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 4 cut(s) 204, 387, 477, 495
BssNI GRCGYC 2 cut(s) 135, 384
BssT1I CCWWGG 3 cut(s) 387, 477, 495
Bst2UI CCWGG 3 cut(s) 111, 125, 206
Bst4CI ACNGT 1 cut(s) 365
BstACI GRCGYC 2 cut(s) 135, 384
BstAFI CTTAAG 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 72, 549
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 5 cut(s) 257, 323, 378, 403, 425
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 141, 479
BstNI CCWGG 3 cut(s) 111, 125, 206
BstSCI CCNGG 3 cut(s) 109, 123, 204
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 2 cut(s) 156, 516
BstXI CCANNNNNNTGG 2 cut(s) 131, 394
BsuRI GGCC 2 cut(s) 209, 255
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 5 cut(s) 257, 323, 378, 403, 425
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 163, 277
CviAII CATG 4 cut(s) 281, 388, 434, 537
CviQI GTAC 2 cut(s) 163, 277
DdeI CTNAG 2 cut(s) 72, 549
DinI GGCGCC 1 cut(s) 136
Eco130I CCWWGG 3 cut(s) 387, 477, 495
Eco32I GATATC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 177
EcoRII CCWGG 3 cut(s) 109, 123, 204
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 387, 477, 495
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 3 cut(s) 387, 477, 495
FaeI CATG 4 cut(s) 284, 391, 437, 540
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 4 cut(s) 280, 387, 433, 536
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 5 cut(s) 244, 330, 385, 410, 432
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 296
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 209, 255
HapII CCGG 2 cut(s) 195, 315
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 135, 384
Hin1II CATG 4 cut(s) 284, 391, 437, 540
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 407
HpaII CCGG 2 cut(s) 195, 315
HphI GGTGA 3 cut(s) 104, 254, 533
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 508, 544
Hpy8I GTNNAC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 176, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 479
HpyF3I CTNAG 2 cut(s) 72, 549
HpySE526I ACGT 2 cut(s) 176, 462
Hsp92I GRCGYC 2 cut(s) 135, 384
Hsp92II CATG 4 cut(s) 284, 391, 437, 540
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 176, 462
MaeIII GTNAC 3 cut(s) 119, 266, 404
MboII GAAGA 7 cut(s) 4, 16, 32, 161, 245, 440, 521
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 3 cut(s) 51, 331, 357
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 3 cut(s) 242, 245, 456
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 222, 345, 360
MslI CAYNNNNRTG 3 cut(s) 175, 262, 392
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 195, 315
MspR9I CCNGG 3 cut(s) 111, 125, 206
MvaI CCWGG 3 cut(s) 111, 125, 206
MwoI GCNNNNNNNGC 2 cut(s) 141, 479
NarI GGCGCC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 387
NlaIII CATG 4 cut(s) 284, 391, 437, 540
NlaIV GGNNCC 2 cut(s) 136, 341
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 266, 404
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 401
PluTI GGCGCC 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 3 cut(s) 109, 123, 204
PspCI CACGTG 1 cut(s) 177
PspGI CCWGG 3 cut(s) 109, 123, 204
PspN4I GGNNCC 2 cut(s) 136, 341
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 164, 278
RsaNI GTAC 2 cut(s) 163, 277
RseI CAYNNNNRTG 3 cut(s) 175, 262, 392
SaqAI TTAA 3 cut(s) 222, 345, 360
SatI GCNGC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 111, 125, 206
SduI GDGCHC 1 cut(s) 182
SetI ASST 7 cut(s) 11, 73, 179, 190, 230, 341, 465
SfaNI GCATC 1 cut(s) 460
SfoI GGCGCC 1 cut(s) 136
SmiMI CAYNNNNRTG 3 cut(s) 175, 262, 392
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 3 cut(s) 51, 331, 357
SsiI CCGC 1 cut(s) 240
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 3 cut(s) 109, 123, 204
StyI CCWWGG 3 cut(s) 387, 477, 495
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 179, 465
TasI AATT 3 cut(s) 51, 331, 357
Tru1I TTAA 3 cut(s) 222, 345, 360
Tru9I TTAA 3 cut(s) 222, 345, 360
TseFI GTSAC 2 cut(s) 266, 404
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 2 cut(s) 266, 404
TspDTI ATGAA 2 cut(s) 17, 441
TspGWI ACGGA 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 318
Vha464I CTTAAG 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.