FvH4_7g13964

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000242
Physical Location & Seq
Forward (+)
12438089 .. 12438451
363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13964.t1

Sequence Viewer

Length: 363 bp
ATGAAGAGCTTCTTCCCAAGGGGCTCTATTCTAGCAACGCTCTTTTTGGGGATTTTCTTGGTCACTGAAGCTCAGCAGTGTCGTTCAAGCGGAGAGCTCAGAGGAAGGACGCCTCCTCCAGGAGAATGCAACACAGAGAACAACTCTATCTGCTGTGAAGAGGGAACAATGTACCCAACATACACCTGCTCTCCACCTATCTCCGGCAACACCCAAGCCTACCTCACTCTTAACAGCTTCGAGGCAGGAGGTGACGGAGGAGGCCCATCAAAATGTGACGGCCAGTACCACGATGACAATACTCCAGTTGTAGCATTATCCACCAGATGGTATAATGGCGGGTCAAGGTGCCTTAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.9

Weight (kDa)

5.26

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 24 - 119 2.2e-35 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AciI CCGC 2 cut(s) 90, 339
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 2 cut(s) 173, 287
AfiI CCNNNNNNNGG 3 cut(s) 119, 203, 327
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 9, 71, 97, 237
AluI AGCT 4 cut(s) 9, 71, 97, 237
Alw21I GWGCWC 1 cut(s) 99
AoxI GGCC 2 cut(s) 262, 280
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 348
BanII GRGCYC 2 cut(s) 26, 99
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 2 cut(s) 274, 321
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 32
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 2 cut(s) 102, 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 175, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 203, 327
Bse1I ACTGG 2 cut(s) 283, 305
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BseMII CTCAG 2 cut(s) 86, 112
BseNI ACTGG 2 cut(s) 283, 305
BseRI GAGGAG 2 cut(s) 105, 273
BshFI GGCC 2 cut(s) 264, 282
BshNI GGYRCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 2 cut(s) 264, 282
Bsp1286I GDGCHC 2 cut(s) 26, 99
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 2 cut(s) 90, 339
BspANI GGCC 2 cut(s) 264, 282
BspCNI CTCAG 2 cut(s) 85, 111
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 353
BsrI ACTGG 2 cut(s) 283, 305
BssECI CCNNGG 1 cut(s) 17
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 110
BstAFI CTTAAG 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 72, 98
BstENI CCTNNNNNAGG 1 cut(s) 117
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 264, 282
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 63, 83
BveI ACCTGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 172, 286
CviJI RGCY 8 cut(s) 9, 24, 71, 97, 218, 237, 264, 282
CviKI_1 RGCY 8 cut(s) 9, 24, 71, 97, 218, 237, 264, 282
CviQI GTAC 2 cut(s) 172, 286
DdeI CTNAG 2 cut(s) 72, 98
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 2 cut(s) 26, 99
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 2 cut(s) 26, 99
ErhI CCWWGG 1 cut(s) 17
FaiI YATR 2 cut(s) 181, 333
FalI AAGNNNNNCTT 1 cut(s) 28
FauI CCCGC 1 cut(s) 332
FriOI GRGCYC 2 cut(s) 26, 99
FspBI CTAG 1 cut(s) 32
GsuI CTGGAG 2 cut(s) 102, 288
HaeIII GGCC 2 cut(s) 264, 282
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 110
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 72, 98
Hsp92I GRCGYC 1 cut(s) 110
LpnPI CCDG 8 cut(s) 105, 132, 199, 217, 231, 296, 318, 337
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 61, 251, 275
MboII GAAGA 3 cut(s) 4, 16, 170
MhlI GDGCHC 2 cut(s) 26, 99
MnlI CCTC 9 cut(s) 95, 123, 126, 154, 233, 235, 242, 251, 254
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 231, 354
MslI CAYNNNNRTG 1 cut(s) 271
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 3 cut(s) 61, 251, 275
PaqCI CACCTGC 1 cut(s) 194
PctI GAATGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 327
PfoI TCCNGGA 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 173, 287
RsaNI GTAC 2 cut(s) 172, 286
RseI CAYNNNNRTG 1 cut(s) 271
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 231, 354
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 26, 99
SetI ASST 9 cut(s) 11, 73, 99, 188, 199, 225, 239, 253, 350
SmiMI CAYNNNNRTG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SsiI CCGC 2 cut(s) 90, 339
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 240
Tru1I TTAA 2 cut(s) 231, 354
Tru9I TTAA 2 cut(s) 231, 354
TscAI CASTG 2 cut(s) 70, 83
TseFI GTSAC 3 cut(s) 61, 251, 275
Tsp45I GTSAC 3 cut(s) 61, 251, 275
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 70, 83
Van91I CCANNNNNTGG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.