Rroxscaffold_4G00300910

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000242
Physical Location & Seq
Reverse (-)
21287603 .. 21288408
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300910.1

Sequence Viewer

Length: 537 bp
ATGGGAAAATGTATTGATCAGATAAGAATTTACTTCAAAAGATCAATGAGGGATATGGGCCATGGCCGTTACGTTGATGGGAAGGAAGCCCCTCCAGGACAATGTAACCAGGAAGACGACTCTGACTGTTGCAAAGCCGGAAAAATGTACCCGACATATACGTGCTCACCACCAACGTCTGGCAACACCAAGGCATACCTCACTCTCAACAGCTTCGAGGCGGGTGGTGACGGGGGTGGCCCATCCGAATGTGATGGAAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCTACCGGATGGTACAATGGTGGATCAAGGTGCCTTAACAACATCAGAATTAACGGTAATGGGCGCAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCAACTGAGGGATGTGATGTTGATCATGATTACCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCTAAGGCTGTCTGGAAAGCTTTAGGTGTGTCTAAAGATAACTGGGGTGGCTTAGATATCACATGGTCTGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.22

Weight (kDa)

4.85

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 32 - 178 8.7e-62 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 179
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 2 cut(s) 64, 369
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 3 cut(s) 149, 263, 308
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 2 cut(s) 94, 108
AluBI AGCT 2 cut(s) 213, 479
AluI AGCT 2 cut(s) 213, 479
Alw21I GWGCWC 1 cut(s) 167
AlwI GGATC 1 cut(s) 325
AoxI GGCC 4 cut(s) 58, 64, 238, 369
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 58, 239
AsuHPI GGTGA 2 cut(s) 159, 239
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 372
BccI CCATC 4 cut(s) 71, 248, 250, 297
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 2 cut(s) 96, 110
BclI TGATCA 2 cut(s) 16, 415
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 96, 110
BmgT120I GGNCC 2 cut(s) 58, 239
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 96, 110
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 2 cut(s) 78, 264
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 61, 189, 372
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 281, 506
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 96, 110
BseDI CCNNGG 3 cut(s) 61, 189, 372
BseGI GGATG 4 cut(s) 242, 308, 388, 410
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 281, 506
BseXI GCAGC 1 cut(s) 372
BshFI GGCC 4 cut(s) 60, 66, 240, 371
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 138, 300
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 4 cut(s) 60, 66, 240, 371
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 16, 41, 317, 415
Bsp19I CCATGG 2 cut(s) 61, 372
BspACI CCGC 1 cut(s) 221
BspANI GGCC 4 cut(s) 60, 66, 240, 371
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 326
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 281, 506
BssECI CCNNGG 3 cut(s) 61, 189, 372
BssMI GATC 4 cut(s) 16, 41, 317, 415
BssT1I CCWWGG 3 cut(s) 61, 189, 372
Bst2UI CCWGG 2 cut(s) 96, 110
Bst4CI ACNGT 2 cut(s) 128, 350
BstBAI YACGTR 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 399, 462, 511
BstDSI CCRYGG 2 cut(s) 61, 372
BstF5I GGATG 4 cut(s) 242, 308, 388, 410
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 19, 44, 320, 418
BstMBI GATC 4 cut(s) 16, 41, 317, 415
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 2 cut(s) 96, 110
BstSCI CCNGG 2 cut(s) 94, 108
BstV1I GCAGC 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuRI GGCC 4 cut(s) 60, 66, 240, 371
BtgI CCRYGG 2 cut(s) 61, 372
BtsCI GGATG 4 cut(s) 242, 308, 388, 410
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 58, 239
Csp6I GTAC 3 cut(s) 148, 262, 307
CviAII CATG 4 cut(s) 62, 373, 419, 522
CviQI GTAC 3 cut(s) 148, 262, 307
DdeI CTNAG 3 cut(s) 399, 462, 511
DpnI GATC 4 cut(s) 18, 43, 319, 417
DpnII GATC 4 cut(s) 16, 41, 317, 415
EaeI YGGCCR 2 cut(s) 64, 369
Eco130I CCWWGG 3 cut(s) 61, 189, 372
Eco32I GATATC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 94, 108
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 3 cut(s) 61, 189, 372
ErhI CCWWGG 3 cut(s) 61, 189, 372
FaeI CATG 4 cut(s) 65, 376, 422, 525
FaiI YATR 8 cut(s) 56, 63, 157, 159, 196, 374, 420, 523
FatI CATG 4 cut(s) 61, 372, 418, 521
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 2 cut(s) 16, 415
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 4 cut(s) 229, 315, 395, 417
Fsp4HI GCNGC 1 cut(s) 361
GlaI GCGC 1 cut(s) 359
GluI GCNGC 1 cut(s) 361
GsuI CTGGAG 2 cut(s) 78, 264
HaeIII GGCC 4 cut(s) 60, 66, 240, 371
HapII CCGG 2 cut(s) 138, 300
HhaI GCGC 1 cut(s) 360
Hin1II CATG 4 cut(s) 65, 376, 422, 525
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 2 cut(s) 119, 392
HpaII CCGG 2 cut(s) 138, 300
HphI GGTGA 2 cut(s) 159, 239
Hpy188I TCNGA 5 cut(s) 21, 124, 247, 341, 529
Hpy188III TCNNGA 2 cut(s) 419, 472
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 128, 350
HpyCH4IV ACGT 3 cut(s) 72, 161, 176
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 399, 462, 511
HpySE526I ACGT 3 cut(s) 72, 161, 176
Hsp92II CATG 4 cut(s) 65, 376, 422, 525
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 2 cut(s) 16, 415
Kzo9I GATC 4 cut(s) 16, 41, 317, 415
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 1 cut(s) 445
MaeII ACGT 3 cut(s) 72, 161, 176
MaeIII GTNAC 4 cut(s) 68, 104, 227, 389
MalI GATC 4 cut(s) 18, 43, 319, 417
MboI GATC 4 cut(s) 16, 41, 317, 415
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 2 cut(s) 27, 342
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 113, 386
MnlI CCTC 7 cut(s) 42, 102, 209, 211, 394, 441, 469
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 3 cut(s) 330, 345, 535
MslI CAYNNNNRTG 3 cut(s) 160, 247, 377
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 2 cut(s) 138, 300
MspR9I CCNGG 2 cut(s) 96, 110
MvaI CCWGG 2 cut(s) 96, 110
MwoI GCNNNNNNNGC 1 cut(s) 464
NcoI CCATGG 2 cut(s) 61, 372
NdeII GATC 4 cut(s) 16, 41, 317, 415
NlaIII CATG 4 cut(s) 65, 376, 422, 525
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 2 cut(s) 227, 389
PagI TCATGA 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 2 cut(s) 113, 386
PpsI GAGTC 2 cut(s) 113, 386
Ppu21I YACGTR 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 94, 108
PspGI CCWGG 2 cut(s) 94, 108
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 2 cut(s) 58, 239
RsaI GTAC 3 cut(s) 149, 263, 308
RsaNI GTAC 3 cut(s) 148, 262, 307
RseI CAYNNNNRTG 3 cut(s) 160, 247, 377
SaqAI TTAA 3 cut(s) 330, 345, 535
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 4 cut(s) 16, 41, 317, 415
Sau96I GGNCC 2 cut(s) 58, 239
SchI GAGTC 2 cut(s) 113, 386
ScrFI CCNGG 2 cut(s) 96, 110
SduI GDGCHC 1 cut(s) 167
SetI ASST 8 cut(s) 75, 164, 179, 201, 215, 326, 481, 487
SfaNI GCATC 1 cut(s) 445
SmiMI CAYNNNNRTG 3 cut(s) 160, 247, 377
Sse9I AATT 2 cut(s) 27, 342
SsiI CCGC 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 94, 108
StyI CCWWGG 3 cut(s) 61, 189, 372
TaaI ACNGT 2 cut(s) 128, 350
TaiI ACGT 3 cut(s) 75, 164, 179
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 27, 342
Tru1I TTAA 3 cut(s) 330, 345, 535
Tru9I TTAA 3 cut(s) 330, 345, 535
TseFI GTSAC 2 cut(s) 227, 389
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 2 cut(s) 227, 389
Van91I CCANNNNNTGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.