Rmu_sc0005065.1_g000045

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0000242
Physical Location & Seq
Forward (+)
214860 .. 215273
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000045.1.cds

Sequence Viewer

Length: 414 bp
atgctgcaaaaaaggcaagctctacaccacttaaaatgctcacctccggtgtccaagcgtacaaaatcaaccttgacgatcaacagcttcgagaaaggcggtgatggtggtggaccgtctgaatgtgacaataaattccactcggataacaccacggtcgtggcattgtccaccgggtggttcaacaataggaagaggggttcacactacgttaccatgcatgctaatggaaggagtactgtgaaagccaaggttgttgatgagtgtgactccacaatgggttgtgatctcgtttatgattcccagcctccatgccctcacaacatcgttgatgcctctccagctgtttggaaggccttgggagttaaggaaagcgactgggtgaaatgcagatattctggtcaggatgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.01

Weight (kDa)

8.76

Isoelectric Point (pI)

67.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 177
AfaI GTAC 2 cut(s) 61, 238
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 3 cut(s) 20, 87, 344
AluI AGCT 3 cut(s) 20, 87, 344
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 33, 113, 394
AvaII GGWCC 1 cut(s) 113
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 175
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 322, 397
BmuI ACTGGG 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 153, 249, 357
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 383
BseDI CCNNGG 3 cut(s) 153, 249, 357
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 47, 174
BslI CCNNNNNNNGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 78, 286
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 153, 249, 357
BssMI GATC 2 cut(s) 78, 286
BssT1I CCWWGG 2 cut(s) 249, 357
Bst4CI ACNGT 3 cut(s) 117, 157, 241
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 18, 222
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 81, 289
BstMBI GATC 2 cut(s) 78, 286
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 13, 341
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 173
BstXI CCANNNNNNTGG 2 cut(s) 160, 348
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 18, 222
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 60, 237
CviAII CATG 3 cut(s) 217, 221, 312
CviJI RGCY 6 cut(s) 20, 87, 248, 307, 344, 356
CviKI_1 RGCY 6 cut(s) 20, 87, 248, 307, 344, 356
CviQI GTAC 2 cut(s) 60, 237
DpnI GATC 2 cut(s) 80, 288
DpnII GATC 2 cut(s) 78, 286
DraIII CACNNNGTG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 249, 357
Eco147I AGGCCT 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 249, 357
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 249, 357
FaeI CATG 3 cut(s) 220, 224, 315
FaiI YATR 4 cut(s) 218, 222, 297, 313
FatI CATG 3 cut(s) 216, 220, 311
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 307
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 356
HapII CCGG 2 cut(s) 47, 174
Hin1II CATG 3 cut(s) 220, 224, 315
HinfI GANTC 2 cut(s) 269, 299
HpaII CCGG 2 cut(s) 47, 174
HphI GGTGA 3 cut(s) 33, 113, 394
Hpy166II GTNNAC 3 cut(s) 113, 171, 203
Hpy188I TCNGA 2 cut(s) 121, 145
Hpy188III TCNNGA 2 cut(s) 91, 404
Hpy8I GTNNAC 3 cut(s) 113, 171, 203
HpyAV CCTTC 2 cut(s) 225, 346
HpyCH4III ACNGT 3 cut(s) 117, 157, 241
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 7, 220, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 341
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 220, 224, 315
Kzo9I GATC 2 cut(s) 78, 286
LpnPI CCDG 7 cut(s) 60, 187, 317, 354, 364, 384, 389
LweI GCATC 2 cut(s) 322, 397
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 125, 211, 266
MalI GATC 2 cut(s) 80, 288
MboI GATC 2 cut(s) 78, 286
MboII GAAGA 1 cut(s) 205
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 5 cut(s) 54, 189, 318, 327, 346
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 2 cut(s) 32, 366
MslI CAYNNNNRTG 2 cut(s) 158, 225
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 47, 174
MspR9I CCNGG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 13, 341
NciI CCSGG 1 cut(s) 175
NdeII GATC 2 cut(s) 78, 286
NlaIII CATG 3 cut(s) 220, 224, 315
NmuCI GTSAC 2 cut(s) 125, 266
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 158
PaeI GCATGC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 356
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 61, 238
RsaNI GTAC 2 cut(s) 60, 237
RseI CAYNNNNRTG 2 cut(s) 158, 225
SaqAI TTAA 2 cut(s) 32, 366
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 78, 286
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 175
SetI ASST 7 cut(s) 22, 46, 74, 89, 213, 255, 346
SfaNI GCATC 2 cut(s) 322, 397
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 158, 225
SphI GCATGC 1 cut(s) 224
Sse9I AATT 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 356
SsiI CCGC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 2 cut(s) 249, 357
TaaI ACNGT 3 cut(s) 117, 157, 241
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 32, 366
Tru9I TTAA 2 cut(s) 32, 366
TseFI GTSAC 2 cut(s) 125, 266
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 125, 266
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.