Prupe.2G166700_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Reverse (-)
21556473 .. 21556970
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G166700.1

Sequence Viewer

Length: 498 bp
GTTGAAGCTCAAGTTTGCAGGCCTAGTGGCAAAATCATAGGGAAGAAACCTCCTCATGGAAAATGCAACACGGAGGACGACTCCGATTGTTGCTTTAAAGGCAAGATCTACACAACTTACAAGTGCTCACCCCAAGTGTCTAGCCACACCAAGGCAGTTCTAACCCTCAACAGCTTCGAGAAGGGAGGGGATGGCGGCGGTCCATCAGAATGTGACAAGAAGTATCACTCTGATGACAGACCAATTGTTGCACTATCAACCGGCTGGTTCAACAGAAAATCCAGGTGCCTCAACAACATTACTATAAGTGCCAATGGGAGCAGTGTGGTGGCAATGGTTGTCGATGAATGCGATTCGACGATGGGATGCGATGAAGTCCATGATTACCAGCCTCCATGTGCTGACAATATTGTTGATGCCTCAAGAGCAGTTTGGGAAGCATTGGGAGTTCCGAAAAATGACTGGGGATATATGGATATTACTTGGGCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.91

Weight (kDa)

5.31

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 285
AciI CCGC 2 cut(s) 195, 198
AfiI CCNNNNNNNGG 2 cut(s) 56, 151
AgsI TTSAA 2 cut(s) 5, 271
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 2 cut(s) 8, 174
AluI AGCT 2 cut(s) 8, 174
Alw21I GWGCWC 1 cut(s) 128
AoxI GGCC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 128
BccI CCATC 3 cut(s) 185, 211, 355
BciT130I CCWGG 1 cut(s) 283
BfaI CTAG 2 cut(s) 24, 141
BglII AGATCT 1 cut(s) 105
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 3 cut(s) 356, 406, 481
BmuI ACTGGG 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuEI CTTGAG 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 151
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 196, 371
BseLI CCNNNNNNNGG 2 cut(s) 56, 151
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 56, 151
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 2 cut(s) 195, 198
BspANI GGCC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 196, 371
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 99, 425
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 196, 371
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 3 cut(s) 56, 380, 396
CviJI RGCY 7 cut(s) 8, 22, 144, 174, 264, 391, 488
CviKI_1 RGCY 7 cut(s) 8, 22, 144, 174, 264, 391, 488
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraI TTTAAA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 59, 383, 399
FaiI YATR 7 cut(s) 38, 57, 305, 381, 397, 471, 473
FatI CATG 3 cut(s) 55, 379, 395
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 2 cut(s) 203, 378
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 24, 141
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 261
Hin1II CATG 3 cut(s) 59, 383, 399
HinfI GANTC 2 cut(s) 80, 353
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 85, 208, 232, 453
Hpy188III TCNNGA 2 cut(s) 178, 423
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 18, 66, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 425
Hsp92II CATG 3 cut(s) 59, 383, 399
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 4, 250, 268, 274, 295, 401, 448
LweI GCATC 3 cut(s) 356, 406, 481
MaeI CTAG 2 cut(s) 24, 141
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 55
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 8 cut(s) 60, 63, 67, 176, 179, 299, 402, 430
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 208, 231
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 283
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 99, 425
NdeII GATC 1 cut(s) 105
NlaIII CATG 3 cut(s) 59, 383, 399
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 105
RseI CAYNNNNRTG 2 cut(s) 208, 231
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 10, 52, 176, 287
SfaNI GCATC 3 cut(s) 356, 406, 481
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 208, 231
SmlI CTYRAG 2 cut(s) 9, 421
SmoI CTYRAG 2 cut(s) 9, 421
Sse9I AATT 1 cut(s) 243
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 2 cut(s) 195, 198
SspI AATATT 1 cut(s) 409
SspMI CTAG 2 cut(s) 24, 141
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 150
TaqI TCGA 3 cut(s) 177, 342, 356
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 360, 387
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 200
XspI CTAG 2 cut(s) 24, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.