Rroxscaffold_4G00300900

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000242
Physical Location & Seq
Reverse (-)
21276890 .. 21278699
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300900.1

Sequence Viewer

Length: 555 bp
ATGGAGCGCATGAGAGGGAGGCATTTAAGAGGACACGTGTCATCCCATCAGTGGACATGTGAAGCACAGCAATGCCGTCCTAGTGGTAGAATCAGAGGAAGGAAGCCCCCTCCTGGACAATGCAACCAGGAGGACGACTCTGACTGCTGCAAAGCAGGAAAAATGTACCCAACATACACGTGCTCGCCACCTATGTCTGGCAACACCAAGGCCTACCTCACTCTTAACAGCTTCGAAGCAGGCGGTGACGGAGGAGGCCCATCTGAATGTGACGGCCAGTACCATGATGACAACACTCCAGTTGTGGCACTATCCACCGGATGGTACAATGGTGGATCAAGGTGCCTTAAGAACATCAGAATTAACGGTAATGGGCAGAGTGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAAGGATGTGATGCAGACCATGATTACCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCCAAGGCTGTTTGGAAAGCCTTGGGTGTGTCTGAAGACAATTGGGGCGGCTTAGATATCACTTGGTCCGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.93

Weight (kDa)

5.13

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 22 - 184 1.5e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 2 cut(s) 243, 525
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 2 cut(s) 274, 387
AcuI CTGAAG 2 cut(s) 438, 531
AcvI CACGTG 2 cut(s) 37, 180
AfaI GTAC 3 cut(s) 167, 281, 326
AfiI CCNNNNNNNGG 4 cut(s) 51, 113, 197, 321
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 4 cut(s) 34, 36, 56, 177
AjnI CCWGG 2 cut(s) 112, 126
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 343
AoxI GGCC 4 cut(s) 210, 256, 274, 387
ApeKI GCWGC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 257, 543
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 543
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BalI TGGCCA 1 cut(s) 389
BanI GGYRCC 1 cut(s) 342
BbrPI CACGTG 2 cut(s) 37, 180
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 134
BccI CCATC 3 cut(s) 54, 268, 315
BceAI ACGGC 2 cut(s) 60, 289
BciT130I CCWGG 2 cut(s) 114, 128
BfaI CTAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 2 cut(s) 148, 526
BlsI GCNGC 2 cut(s) 149, 527
Bme1390I CCNGG 2 cut(s) 114, 128
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 257, 543
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 114, 128
BmsI GCATC 3 cut(s) 418, 463, 538
BoxI GACNNNNGTC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 395, 427
BpmI CTGGAG 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 234
BsaAI YACGTR 2 cut(s) 37, 180
BsaJI CCNNGG 4 cut(s) 207, 390, 480, 498
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 113, 197, 321
Bse1I ACTGG 2 cut(s) 277, 299
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 114, 128
BseDI CCNNGG 4 cut(s) 207, 390, 480, 498
BseGI GGATG 4 cut(s) 41, 326, 406, 428
BseLI CCNNNNNNNGG 4 cut(s) 51, 113, 197, 321
BseMI GCAATG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 277, 299
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 4 cut(s) 212, 258, 276, 389
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 4 cut(s) 51, 113, 197, 321
BsnI GGCC 4 cut(s) 212, 258, 276, 389
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 243, 525
BspANI GGCC 4 cut(s) 212, 258, 276, 389
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 77
BsrI ACTGG 2 cut(s) 277, 299
BssECI CCNNGG 4 cut(s) 207, 390, 480, 498
BssMI GATC 1 cut(s) 335
BssT1I CCWWGG 4 cut(s) 207, 390, 480, 498
Bst2UI CCWGG 2 cut(s) 114, 128
Bst4CI ACNGT 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 347
BstBAI YACGTR 2 cut(s) 37, 180
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 185, 241
BstDEI CTNAG 1 cut(s) 529
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 4 cut(s) 41, 326, 406, 428
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 1 cut(s) 338
BstMBI GATC 1 cut(s) 335
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 114, 128
BstNSI RCATGY 1 cut(s) 60
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 112, 126
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuRI GGCC 4 cut(s) 212, 258, 276, 389
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 4 cut(s) 41, 326, 406, 428
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 185, 241
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 257, 543
Csp6I GTAC 3 cut(s) 166, 280, 325
CviAII CATG 5 cut(s) 10, 57, 284, 391, 437
CviQI GTAC 3 cut(s) 166, 280, 325
DdeI CTNAG 1 cut(s) 529
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 274, 387
Eco130I CCWWGG 4 cut(s) 207, 390, 480, 498
Eco147I AGGCCT 1 cut(s) 212
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 2 cut(s) 438, 531
Eco72I CACGTG 2 cut(s) 37, 180
EcoRII CCWGG 2 cut(s) 112, 126
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 4 cut(s) 207, 390, 480, 498
ErhI CCWWGG 4 cut(s) 207, 390, 480, 498
FaeI CATG 5 cut(s) 13, 60, 287, 394, 440
FaiI YATR 7 cut(s) 11, 58, 175, 194, 285, 392, 438
FatI CATG 5 cut(s) 9, 56, 283, 390, 436
Fnu4HI GCNGC 2 cut(s) 148, 526
FokI GGATG 4 cut(s) 28, 333, 413, 435
Fsp4HI GCNGC 2 cut(s) 148, 526
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 8
GluI GCNGC 2 cut(s) 148, 526
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 4 cut(s) 212, 258, 276, 389
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 9
Hin1II CATG 5 cut(s) 13, 60, 287, 394, 440
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 3 cut(s) 90, 137, 410
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 6 cut(s) 95, 142, 265, 359, 511, 547
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 93, 413
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 36, 179
HpyCH4V TGCA 3 cut(s) 123, 150, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 2 cut(s) 36, 179
Hsp92II CATG 5 cut(s) 13, 60, 287, 394, 440
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 335
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 3 cut(s) 418, 463, 538
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 36, 179
MaeIII GTNAC 3 cut(s) 245, 269, 407
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 1 cut(s) 524
MfeI CAATTG 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 2 cut(s) 360, 517
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 2 cut(s) 131, 404
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 5 cut(s) 26, 225, 348, 363, 553
MslI CAYNNNNRTG 4 cut(s) 70, 178, 265, 395
Msp20I TGGCCA 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 114, 128
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 2 cut(s) 114, 128
MwoI GCNNNNNNNGC 1 cut(s) 482
NcoI CCATGG 1 cut(s) 390
NdeII GATC 1 cut(s) 335
NlaIII CATG 5 cut(s) 13, 60, 287, 394, 440
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 3 cut(s) 245, 269, 407
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 212
PciI ACATGT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 2 cut(s) 149, 527
PleI GAGTC 2 cut(s) 131, 404
PmaCI CACGTG 2 cut(s) 37, 180
PmlI CACGTG 2 cut(s) 37, 180
PpsI GAGTC 2 cut(s) 131, 404
Ppu21I YACGTR 2 cut(s) 37, 180
PscI ACATGT 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 112, 126
PspCI CACGTG 2 cut(s) 37, 180
PspGI CCWGG 2 cut(s) 112, 126
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 257, 543
RsaI GTAC 3 cut(s) 167, 281, 326
RsaNI GTAC 3 cut(s) 166, 280, 325
RseI CAYNNNNRTG 4 cut(s) 70, 178, 265, 395
SaqAI TTAA 5 cut(s) 26, 225, 348, 363, 553
SatI GCNGC 2 cut(s) 148, 526
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 2 cut(s) 257, 543
SchI GAGTC 2 cut(s) 131, 404
ScrFI CCNGG 2 cut(s) 114, 128
SduI GDGCHC 1 cut(s) 185
SetI ASST 6 cut(s) 39, 182, 193, 219, 233, 344
SfaNI GCATC 3 cut(s) 418, 463, 538
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 543
SmiMI CAYNNNNRTG 4 cut(s) 70, 178, 265, 395
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 360, 517
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 2 cut(s) 243, 525
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 112, 126
StyI CCWWGG 4 cut(s) 207, 390, 480, 498
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 39, 182
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 360, 517
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 5 cut(s) 26, 225, 348, 363, 553
Tru9I TTAA 5 cut(s) 26, 225, 348, 363, 553
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 3 cut(s) 245, 269, 407
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 3 cut(s) 245, 269, 407
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 321
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 543
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.