Prupe.2G165700_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Forward (+)
21496980 .. 21497755
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G165700.1

Sequence Viewer

Length: 426 bp
ATGAATGACTCTGACTGCTGCGTTGCCGGCAAAATGTACCCGACCTACAAATGTTCACCGCCATTGTCCGGGAACACCAAGGCCTACCTAACTCTCAACAGTTTTGAGAAAAATGGAGACGGAGGTGGTCCATCAGAATGTGACAACCAATACCACAATGACAACACACCGGTTGTGGCATTGTCCACTGGATGGTACAACAATGGAGGAAGGTGCCATAACCACATCAGAATTAATGGTAACGGGCGCAGTGTGGTGGCCATGGTGGTAGATGAGTGTAACTCTACCGAGGGATGTGATGCAGACCATGACTACCAACCTCCTTGTCCTAACAACATTGTTGATGCTTCAAAGGCTGTCTGGAAAGCCTTGGGTGTGCCTGAGGACAACTGGGGTGGCTTAGATATCACATGGTCCGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.19

Weight (kDa)

4.58

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 192
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 258
AfaI GTAC 2 cut(s) 38, 197
AfiI CCNNNNNNNGG 2 cut(s) 68, 192
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 2 cut(s) 81, 258
ApeKI GCWGC 1 cut(s) 18
AseI ATTAAT 1 cut(s) 234
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 128, 414
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 48
AvaII GGWCC 2 cut(s) 128, 414
AxyI CCTNAGG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 5
BccI CCATC 2 cut(s) 139, 186
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 128, 414
BmgT120I GGNCC 2 cut(s) 128, 414
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 289, 334
BmuI ACTGGG 1 cut(s) 400
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpuMI CCSGG 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 78, 261, 288, 369
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 192
Bse118I RCCGGY 2 cut(s) 26, 169
Bse1I ACTGG 2 cut(s) 193, 395
Bse21I CCTNAGG 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 78, 261, 288, 369
BseGI GGATG 2 cut(s) 197, 299
BseLI CCNNNNNNNGG 2 cut(s) 68, 192
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 193, 395
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 2 cut(s) 83, 260
BshNI GGYRCC 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 169
BsiSI CCGG 3 cut(s) 27, 69, 170
BslI CCNNNNNNNGG 2 cut(s) 68, 192
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 2 cut(s) 83, 260
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 83, 260
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 26, 169
BsrI ACTGG 2 cut(s) 193, 395
BssAI RCCGGY 2 cut(s) 26, 169
BssECI CCNNGG 4 cut(s) 78, 261, 288, 369
BssT1I CCWWGG 3 cut(s) 78, 261, 369
Bst4CI ACNGT 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 381, 400, 423
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 197, 299
BstHHI GCGC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 27, 353
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 5
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 2 cut(s) 83, 260
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 197, 299
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 186, 256
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 2 cut(s) 26, 169
Cfr13I GGNCC 2 cut(s) 128, 414
Csp6I GTAC 2 cut(s) 37, 196
CspAI ACCGGT 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 3 cut(s) 262, 308, 411
CviJI RGCY 5 cut(s) 83, 260, 356, 368, 399
CviKI_1 RGCY 5 cut(s) 83, 260, 356, 368, 399
CviQI GTAC 2 cut(s) 37, 196
DdeI CTNAG 3 cut(s) 381, 400, 423
EaeI YGGCCR 1 cut(s) 258
Eco130I CCWWGG 3 cut(s) 78, 261, 369
Eco147I AGGCCT 1 cut(s) 83
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 128, 414
Eco81I CCTNAGG 1 cut(s) 381
EcoRV GATATC 1 cut(s) 406
EcoT14I CCWWGG 3 cut(s) 78, 261, 369
ErhI CCWWGG 3 cut(s) 78, 261, 369
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 265, 311, 414
FaiI YATR 4 cut(s) 219, 263, 309, 412
FatI CATG 3 cut(s) 261, 307, 410
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 204, 306
Fsp4HI GCNGC 1 cut(s) 19
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 83, 260
HapII CCGG 3 cut(s) 27, 69, 170
HhaI GCGC 1 cut(s) 249
Hin1II CATG 3 cut(s) 265, 311, 414
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 1 cut(s) 8
HpaII CCGG 3 cut(s) 27, 69, 170
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 56, 186
Hpy188I TCNGA 4 cut(s) 13, 136, 230, 418
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 56, 186
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 353
HpyF3I CTNAG 3 cut(s) 381, 400, 423
Hsp92II CATG 3 cut(s) 265, 311, 414
HspAI GCGC 1 cut(s) 247
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
LpnPI CCDG 7 cut(s) 40, 82, 174, 183, 346, 376, 393
Lsp1109I GCAGC 1 cut(s) 5
LweI GCATC 2 cut(s) 289, 334
MaeIII GTNAC 3 cut(s) 140, 239, 278
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 5 cut(s) 116, 200, 283, 330, 376
Mox20I TGGCCA 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 26
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 136
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 3 cut(s) 27, 69, 170
MspR9I CCNGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 27, 353
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 70
NcoI CCATGG 1 cut(s) 261
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 265, 311, 414
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PshBI ATTAAT 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 128, 414
RsaI GTAC 2 cut(s) 38, 197
RsaNI GTAC 2 cut(s) 37, 196
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 2 cut(s) 128, 414
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 70
SetI ASST 5 cut(s) 47, 90, 127, 215, 322
SfaNI GCATC 2 cut(s) 289, 334
SinI GGWCC 2 cut(s) 128, 414
SmiMI CAYNNNNRTG 1 cut(s) 136
Sse9I AATT 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 59
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 3 cut(s) 78, 261, 369
TaaI ACNGT 1 cut(s) 101
TasI AATT 1 cut(s) 231
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 193, 256
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 193, 256
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 2 cut(s) 128, 414
VspI ATTAAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.