Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008888

Physical Location & Seq

Genomic Coordinates Forward (+)

6572862 .. 6578963

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1039000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAACAATTTGGAGGGTCGTCTTCCCGATTTTGTCGGGTTTTCTGGGTTGGAGGCTTTGGACTTTGCTCGGAACAACTTGAATGGAAGCATTGACTCCGAGTTGGACGGGTTGGTCGGGCTCAGAAGCTGGAACCTTAGCTTCAACCAATTTATTGGGTCTGTTCCGACCCGTCTCGGAAAATCCAAGGTTTTGGAGGAGCTTGAGCTTTCTATGAATACGTTTGATGGTCCTATCCCTGCTGAACTTGTGGGATACCAGAATTTGACTCTGCTTGATCTAAGAGGAAATCGGCTTTCCGGGAGTGTTCGTTTTCTGGGTTGGAGTATTCCTGATGGAATCGGAGAGCTCGCCAAGTTGGAGGTTTTGATTCTTTCGGCTAATGGATTATCCGGCAGAATCCCACAAAGCATTTCCAATACCACCGGCCTCTGGAGATTTGCAGCAAGTTCTAACAATTTCAATGGTTCAATTCCTGATGGCATTGCAAAGCATCTGAAAACCTTGGACCTCAGTTTTAATAGCTTGAGTGGGTCGATTCCATCGGACCTCTTGTCATCGTTGAATCTGCATACTCTGGATTTGTCGAACAATAGATTGGAGGGACAGATACCGCCATTTCTATCTCCGAGCTTGGTCAGGTTGAGACTGGGAAGCAATTCGCTTGATGGGAAGATACCTTCTACAGCAAATGCAACACATCAAAAGTTGACCTACTTGGAGATGGAAAACAACAACTTGACTGGACCAATTCCTCCTGAATTGGGTGATTGCCAGAATTTGGCGTTGCTGAATTTGGCTCAGAATCACCTGTCTGGGGCTCTGCCGGTGGAGTTGGGTAGCCTTAGCCATCTTCAGGTCTTGAAACTTCAATTTAACAATTTGAGTGGTCGAATTCCAATTCAAATTACTCAACTGCCCAAGTTGTCCATTCTGAATATCAGCTGGAATTCTCTCGACGGTTCAATACCTCCTTCAGTTTCAAACATGCAGAATCTTACTAACATGAACTTACAAGGCAACAAGCTGAACGGTTCCATTCCCGCCAGTATTGCCTTCATGGATTCTCTGATGGAACTCCAACTTGGAGAAAATCACTTAAGTGGTGACATTCCAAGAATGCCGATGTCTTTGCAGATTGCTTTGAATCTCAGCAGCAATCTTTTTCAAGGACCTATTCCCGAAACTCTTTCGAGGCTCAGTAATTTAGAAATTCTGGATCTCTCAAATAACAAATTCTCAGGTAAGATACCGGATTTTTTTACTGGAATGAAAACCTTGACACAGTTGTTACTTTCTAACAATGAGCTCTCTGGAGAAATTCCGGATTTCGGTTCTTGGGTCATGGTCAACACAAGTGGGAACGAGGGTGTGACTAACAGAACAACAAAAAGCAGTCTGCCCAAATCGGAGAAGAAAGGAATGTCATGTGCTGGGAAAATTCTTGTTGCGATTGTTTCTACTGTTTTTGTTGTTTTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

495

Amino Acids

53.28

Weight (kDa)

5.49

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	253 - 361	6e-08	Leucine-rich repeat region
LRR_8	PF13855	382 - 437	6.4e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008888)

Species	Orthologous Gene IDs
malus_domestica	MD05G1039000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316131 RchiOBHm_Chr1g0316221 RchiOBHm_Chr1g0316231 RchiOBHm_Chr1g0316271 RchiOBHm_Chr2g0168401 RchiOBHm_Chr4g0418911 RchiOBHm_Chr4g0428241 RchiOBHm_Chr6g0256141 RchiOBHm_Chr6g0256231 RchiOBHm_Chr6g0256321 RchiOBHm_Chr6g0276131 RchiOBHm_Chr7g0203941 RchiOBHm_Chr7g0242941
rosa_laevigata	RLG00000015040 RLG00000030684 RLG00000030685 RLG00000030691
rosa_roxburghii	Rroxscaffold_4G00315440
rosa_rugosa	Rorug01G0009500
rosa_samantha	Rh1BG014300 Rh1DG014100
rosa_wichuraiana	Rw1G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccIII	TCCGGA	1 cut(s)	1324
AciI	CCGC	2 cut(s)	614, 1044
AclWI	GGATC	1 cut(s)	1227
AcsI	RAATTY	9 cut(s)	262, 778, 793, 894, 949, 1212, 1235, 1320, 1440
AcuI	CTGAAG	2 cut(s)	839, 960
AfiI	CCNNNNNNNGG	6 cut(s)	432, 764, 781, 817, 856, 1331
AflII	CTTAAG	1 cut(s)	1099
AhdI	GACNNNNNGTC	1 cut(s)	553
AjuI	GAANNNNNNNTTGG	4 cut(s)	581, 613, 1068, 1100
AleI	CACNNNNGTG	1 cut(s)	1101
Alw21I	GWGCWC	2 cut(s)	351, 1311
Alw26I	GTCTC	2 cut(s)	179, 640
AlwI	GGATC	1 cut(s)	1227
AlwNI	CAGNNNCTG	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	1324
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	2 cut(s)	443, 1155
ApoI	RAATTY	9 cut(s)	262, 778, 793, 894, 949, 1212, 1235, 1320, 1440
Asp700I	GAANNNNTTC	1 cut(s)	658
AspS9I	GGNCC	5 cut(s)	230, 508, 547, 746, 1172
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	779, 800, 1118
AvaII	GGWCC	5 cut(s)	230, 508, 547, 746, 1172
BanII	GRGCYC	4 cut(s)	123, 351, 823, 1311
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	351, 1311
BbvI	GCAGC	2 cut(s)	455, 1167
BccI	CCATC	8 cut(s)	221, 329, 473, 550, 662, 718, 858, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	1114, 1148
BciVI	GTATCC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	179, 640
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	1099
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	444, 1156
BlsI	GCNGC	2 cut(s)	445, 1157
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	5 cut(s)	230, 508, 547, 746, 1172
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmgT120I	GGNCC	5 cut(s)	230, 508, 547, 746, 1172
BmiI	GGNNCC	2 cut(s)	134, 1036
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	454, 1335
Bpu10I	CCTNAGC	2 cut(s)	137, 845
BpuEI	CTTGAG	2 cut(s)	224, 547
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	186, 504
BsaWI	WCCGGW	2 cut(s)	1252, 1324
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	6 cut(s)	432, 764, 781, 817, 856, 1331
Bse118I	RCCGGY	2 cut(s)	425, 826
Bse1I	ACTGG	4 cut(s)	654, 748, 1047, 1270
Bse3DI	GCAATG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	1324
BseDI	CCNNGG	2 cut(s)	186, 504
BseLI	CCNNNNNNNGG	6 cut(s)	432, 764, 781, 817, 856, 1331
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	6 cut(s)	136, 526, 815, 1165, 1213, 1254
BseNI	ACTGG	4 cut(s)	654, 748, 1047, 1270
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	455, 1167
BseYI	CCCAGC	1 cut(s)	1433
BshFI	GGCC	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	351, 1311
BsiSI	CCGG	6 cut(s)	300, 393, 426, 827, 1253, 1325
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	6 cut(s)	432, 764, 781, 817, 856, 1331
BsmAI	GTCTC	2 cut(s)	179, 640
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	4 cut(s)	123, 351, 823, 1311
Bsp13I	TCCGGA	1 cut(s)	1324
Bsp143I	GATC	2 cut(s)	277, 1219
BspACI	CCGC	2 cut(s)	614, 1044
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	6 cut(s)	135, 525, 814, 1164, 1212, 1253
BspEI	TCCGGA	1 cut(s)	1324
BspLI	GGNNCC	2 cut(s)	134, 1036
BspPI	GGATC	1 cut(s)	1227
BspTI	CTTAAG	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	2 cut(s)	425, 826
BsrI	ACTGG	4 cut(s)	654, 748, 1047, 1270
BssAI	RCCGGY	2 cut(s)	425, 826
BssECI	CCNNGG	2 cut(s)	186, 504
BssMI	GATC	2 cut(s)	277, 1219
BssT1I	CCWWGG	2 cut(s)	186, 504
Bst4CI	ACNGT	4 cut(s)	962, 1034, 1287, 1465
BstAFI	CTTAAG	1 cut(s)	1099
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	9 cut(s)	122, 137, 281, 512, 801, 845, 1151, 1199, 1240
BstKTI	GATC	2 cut(s)	280, 1222
BstMAI	GTCTC	2 cut(s)	179, 640
BstMBI	GATC	2 cut(s)	277, 1219
BstMWI	GCNNNNNNNGC	1 cut(s)	1052
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	2 cut(s)	455, 1167
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	1219
BstXI	CCANNNNNNTGG	2 cut(s)	155, 193
BstYI	RGATCY	1 cut(s)	1219
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr10I	RCCGGY	2 cut(s)	425, 826
Cfr13I	GGNCC	5 cut(s)	230, 508, 547, 746, 1172
CspCI	CAANNNNNGTGG	4 cut(s)	868, 903, 1339, 1374
CviAII	CATG	5 cut(s)	988, 1006, 1060, 1345, 1428
DdeI	CTNAG	9 cut(s)	122, 137, 281, 512, 801, 845, 1151, 1199, 1240
DpnI	GATC	2 cut(s)	279, 1221
DpnII	GATC	2 cut(s)	277, 1219
DrdI	GACNNNNNNGTC	1 cut(s)	113
DriI	GACNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1105I	GACNNNNNGTC	1 cut(s)	553
Ecl136II	GAGCTC	2 cut(s)	349, 1309
Eco130I	CCWWGG	2 cut(s)	186, 504
Eco24I	GRGCYC	4 cut(s)	123, 351, 823, 1311
Eco47I	GGWCC	5 cut(s)	230, 508, 547, 746, 1172
Eco53kI	GAGCTC	2 cut(s)	349, 1309
Eco57I	CTGAAG	2 cut(s)	839, 960
EcoICRI	GAGCTC	2 cut(s)	349, 1309
EcoO109I	RGGNCCY	1 cut(s)	1172
EcoRI	GAATTC	2 cut(s)	894, 949
EcoT14I	CCWWGG	2 cut(s)	186, 504
EcoT38I	GRGCYC	4 cut(s)	123, 351, 823, 1311
ErhI	CCWWGG	2 cut(s)	186, 504
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	5 cut(s)	991, 1009, 1063, 1348, 1431
FaiI	YATR	7 cut(s)	215, 573, 989, 1007, 1061, 1346, 1429
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	5 cut(s)	987, 1005, 1059, 1344, 1427
FauI	CCCGC	1 cut(s)	1051
Fnu4HI	GCNGC	2 cut(s)	444, 1156
FriOI	GRGCYC	4 cut(s)	123, 351, 823, 1311
Fsp4HI	GCNGC	2 cut(s)	444, 1156
GluI	GCNGC	2 cut(s)	444, 1156
GsaI	CCCAGC	1 cut(s)	1437
GsuI	CTGGAG	2 cut(s)	454, 1335
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	6 cut(s)	300, 393, 426, 827, 1253, 1325
Hin1II	CATG	5 cut(s)	991, 1009, 1063, 1348, 1431
HincII	GTYRAC	2 cut(s)	711, 1351
HindII	GTYRAC	2 cut(s)	711, 1351
HpaII	CCGG	6 cut(s)	300, 393, 426, 827, 1253, 1325
HphI	GGTGA	3 cut(s)	779, 800, 1118
Hpy166II	GTNNAC	2 cut(s)	711, 1351
Hpy8I	GTNNAC	2 cut(s)	711, 1351
Hpy99I	CGWCG	1 cut(s)	962
HpyAV	CCTTC	3 cut(s)	690, 984, 1066
HpyCH4III	ACNGT	4 cut(s)	962, 1034, 1287, 1465
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	6 cut(s)	443, 488, 571, 695, 991, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1052
HpyF3I	CTNAG	9 cut(s)	122, 137, 281, 512, 801, 845, 1151, 1199, 1240
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	5 cut(s)	991, 1009, 1063, 1348, 1431
Kpn2I	TCCGGA	1 cut(s)	1324
Kzo9I	GATC	2 cut(s)	277, 1219
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	455, 1167
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	1106, 1290, 1372
MalI	GATC	2 cut(s)	279, 1221
MboI	GATC	2 cut(s)	277, 1219
MboII	GAAGA	4 cut(s)	14, 685, 845, 1426
MflI	RGATCY	1 cut(s)	1219
MhlI	GDGCHC	4 cut(s)	123, 351, 823, 1311
MlyI	GAGTC	2 cut(s)	89, 262
MmeI	TCCRAC	6 cut(s)	30, 84, 191, 302, 339, 1105
MroI	TCCGGA	1 cut(s)	1324
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	3 cut(s)	519, 876, 1100
MslI	CAYNNNNRTG	1 cut(s)	1101
MspA1I	CMGCKG	1 cut(s)	945
MspCI	CTTAAG	1 cut(s)	1099
MspI	CCGG	6 cut(s)	300, 393, 426, 827, 1253, 1325
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	1125
MwoI	GCNNNNNNNGC	1 cut(s)	1052
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	2 cut(s)	277, 1219
NlaIII	CATG	5 cut(s)	991, 1009, 1063, 1348, 1431
NlaIV	GGNNCC	2 cut(s)	134, 1036
NmuCI	GTSAC	2 cut(s)	1106, 1372
NspI	RCATGY	1 cut(s)	991
OliI	CACNNNNGTG	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	1125
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	9 cut(s)	339, 370, 399, 538, 565, 805, 994, 1064, 1147
PflMI	CCANNNNNTGG	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	445, 1157
PleI	GAGTC	2 cut(s)	89, 262
PpsI	GAGTC	2 cut(s)	89, 262
PpuMI	RGGWCCY	1 cut(s)	1172
Psp124BI	GAGCTC	2 cut(s)	351, 1311
Psp5II	RGGWCCY	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	1433
PspN4I	GGNNCC	2 cut(s)	134, 1036
PspPI	GGNCC	5 cut(s)	230, 508, 547, 746, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PstNI	CAGNNNCTG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	945
RseI	CAYNNNNRTG	1 cut(s)	1101
SacI	GAGCTC	2 cut(s)	351, 1311
SaqAI	TTAA	3 cut(s)	519, 876, 1100
SatI	GCNGC	2 cut(s)	444, 1156
Sau3AI	GATC	2 cut(s)	277, 1219
Sau96I	GGNCC	5 cut(s)	230, 508, 547, 746, 1172
SchI	GAGTC	2 cut(s)	89, 262
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	4 cut(s)	123, 351, 823, 1311
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	5 cut(s)	230, 508, 547, 746, 1172
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	3 cut(s)	203, 526, 1099
SmoI	CTYRAG	3 cut(s)	203, 526, 1099
SsiI	CCGC	2 cut(s)	614, 1044
SstI	GAGCTC	2 cut(s)	351, 1311
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	186, 504
TaaI	ACNGT	4 cut(s)	962, 1034, 1287, 1465
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	5 cut(s)	536, 587, 892, 957, 1193
TfiI	GAWTC	9 cut(s)	339, 370, 399, 538, 565, 805, 994, 1064, 1147
Tru1I	TTAA	3 cut(s)	519, 876, 1100
Tru9I	TTAA	3 cut(s)	519, 876, 1100
TseFI	GTSAC	2 cut(s)	1106, 1372
TseI	GCWGC	2 cut(s)	443, 1155
Tsp45I	GTSAC	2 cut(s)	1106, 1372
TspDTI	ATGAA	5 cut(s)	17, 230, 1022, 1048, 1286
Van91I	CCANNNNNTGG	1 cut(s)	781
Vha464I	CTTAAG	1 cut(s)	1099
VpaK11BI	GGWCC	5 cut(s)	230, 508, 547, 746, 1172
XapI	RAATTY	9 cut(s)	262, 778, 793, 894, 949, 1212, 1235, 1320, 1440
XceI	RCATGY	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.