Rh1DG014100

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008888
Physical Location & Seq
Reverse (-)
2321984 .. 2322640
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG014100.1

Sequence Viewer

Length: 657 bp
ATGTCTATCGGAAGAAGTCGAGTGCAATCCCCTGAACCATTCATCTGTAACCCAAATTTCTCTATCAATTGGTCTCTATCCTCCTCGGATTTTCTTCCAATTATTTGCCAAATTGAGTCTTTGCAGATTCTTGATGTGTCACACAACCTTCTGACTACAATCCCATTCGAGTTTATCACAGCTTGTGGAAGCATAGATGGGCTAAAGCTACTCAATTTCAGTTATAACAATTTGACTGATTCCTTGCGTAGCTGTGTTGGGTTTGCTGTGTTGGAGTTCTTGGACCTCTCTCATAACAGTTTGTTTGGGAGCTTTTCCTTAGAGTTGGATGGGCTGGTTGGGCTTAAAAGCTTGAACCTTAGCTTCAACCATTTCGGAGGGTCTGTTCCTACTCATCTTGGGAAATGCATGGTTTTAGAGGAGCTTGTGCTTTCTAAGAATGGCTTTCACGGTGTAATGCCTGTTGAAATTTTGGGCTATCAGAATTTGACTATGATTGGCTCTATTTCTCAGAGAATGGGAGAGCTTTCCAAGCTGGAAGTTGGGAAAATCCTATCCAACATCACAAGCCTCAGGCGTTTTGCAGCACATACAAACTATTTCCAGGGTCCACTTTCCGGTGCAAATTACAAAGCATTTGGAAAGTTTGGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.87

Weight (kDa)

6.28

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 40 - 101 3.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AcsI RAATTY 3 cut(s) 55, 468, 484
AfiI CCNNNNNNNGG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 355, 367, 467
AjnI CCWGG 1 cut(s) 603
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 9 cut(s) 182, 208, 252, 312, 351, 363, 424, 526, 535
AluI AGCT 9 cut(s) 182, 208, 252, 312, 351, 363, 424, 526, 535
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 3 cut(s) 55, 468, 484
AspS9I GGNCC 2 cut(s) 283, 608
AvaII GGWCC 2 cut(s) 283, 608
AxyI CCTNAGG 1 cut(s) 572
BbvI GCAGC 1 cut(s) 596
BccI CCATC 2 cut(s) 191, 323
BciT130I CCWGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 2 cut(s) 283, 608
BmgT120I GGNCC 2 cut(s) 283, 608
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 84, 604
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse21I CCTNAGG 1 cut(s) 572
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 84, 604
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMII CTCAG 2 cut(s) 524, 586
BseRI GAGGAG 2 cut(s) 73, 434
BseXI GCAGC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 650
BspCNI CTCAG 2 cut(s) 523, 585
BspLI GGNNCC 1 cut(s) 609
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 84, 604
BssMI GATC 1 cut(s) 650
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 2 cut(s) 299, 452
BstDEI CTNAG 6 cut(s) 319, 359, 435, 510, 572, 654
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 653
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 650
BstMWI GCNNNNNNNGC 2 cut(s) 340, 532
BstNI CCWGG 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 603
BstV1I GCAGC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
Bsu36I CCTNAGG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 283, 608
CviAII CATG 1 cut(s) 409
DdeI CTNAG 6 cut(s) 319, 359, 435, 510, 572, 654
DpnI GATC 1 cut(s) 652
DpnII GATC 1 cut(s) 650
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 283, 608
Eco81I CCTNAGG 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 410
FaeI CATG 1 cut(s) 412
FaiI YATR 6 cut(s) 194, 225, 294, 410, 494, 591
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 585
GluI GCNGC 1 cut(s) 585
HapII CCGG 1 cut(s) 618
Hin1II CATG 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 3 cut(s) 116, 127, 239
HpaII CCGG 1 cut(s) 618
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 6 cut(s) 11, 88, 153, 377, 483, 513
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 299, 452
HpyCH4V TGCA 5 cut(s) 25, 124, 408, 584, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 532
HpyF3I CTNAG 6 cut(s) 319, 359, 435, 510, 572, 654
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 1 cut(s) 650
LmnI GCTCC 2 cut(s) 309, 421
LpnPI CCDG 8 cut(s) 45, 320, 474, 521, 559, 590, 617, 631
Lsp1109I GCAGC 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 47, 138
MalI GATC 1 cut(s) 652
MboI GATC 1 cut(s) 650
MboII GAAGA 2 cut(s) 24, 86
MfeI CAATTG 1 cut(s) 67
MflI RGATCY 1 cut(s) 650
MluCI AATT 9 cut(s) 55, 67, 99, 111, 214, 229, 468, 484, 625
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 3 cut(s) 252, 306, 582
MnlI CCTC 6 cut(s) 91, 94, 296, 371, 412, 581
Mph1103I ATGCAT 1 cut(s) 410
MseI TTAA 1 cut(s) 345
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 605
MunI CAATTG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 2 cut(s) 340, 532
NdeII GATC 1 cut(s) 650
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 410
PfeI GAWTC 2 cut(s) 127, 239
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 2 cut(s) 283, 608
PsuI RGATCY 1 cut(s) 650
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 1 cut(s) 650
Sau96I GGNCC 2 cut(s) 283, 608
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 605
SinI GGWCC 2 cut(s) 283, 608
Sse9I AATT 9 cut(s) 55, 67, 99, 111, 214, 229, 468, 484, 625
StyD4I CCNGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 299, 452
TaqI TCGA 2 cut(s) 19, 168
TasI AATT 9 cut(s) 55, 67, 99, 111, 214, 229, 468, 484, 625
TfiI GAWTC 2 cut(s) 127, 239
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 283, 608
XapI RAATTY 3 cut(s) 55, 468, 484
Zsp2I ATGCAT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.