RchiOBHm_Chr7g0242941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008888
Physical Location & Seq
Forward (+)
69251559 .. 69253115
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21772

Sequence Viewer

Length: 783 bp
ATGTCACAGAGAACAGCCCTTAAGTGTAAAAATCTTAATGTTCCAGACACTCGTCAAGCACTTCATAGAGAAATGAAAATCAAATTTGGCAAGTCTCCGGTTTCTCCACCCTCTGTGGTGCGTCTCCACCCTTTTGTGGTGAGTTTCCTGAGCTTGGTCTCAGTTTTAGATCTATTTATGTCTCTTTATCTTTCTATCTTTCCTTGTTCTTGCCCAATTGTTCATCAAATTTCCAGATCTACTATCAAATCTCACATTCTCCTCCATCTCAAACACCTCACCCTCTCATCTTCATCCGAATTTTCTCTTTTTCCACAACCTCATCTTCACATTCAACCCTGGGTGTCTCGACAGAGACTTGTTCACTTAACTCCACACATGAAGATTGCAGCAGTACCGGCAAACCACCGAAGATTGTGGACATCGCCGGACCAGTGGTGTTGTGATGCATGGTGGTCTCCACCTCCACGACTACCTTTACTAAGTTCTTTGTTTTGTTCTTGTTGTTCTTCCTGTGCTTGCAATTTAGGTGTGGAGAATGATGGTGGAGAGTTTACTTGGCCTCTGGATGTCAAGATTCTGTCGGGTTCAGTTGGTTGCAGTATCACCATGGCGGCCAGCCTCTGCGTTGAAGTGAAGAGTTTGGTGTTAGGTCTAGGTTTCTTTTGGAATTTTGGGCTTTTGGGCTTCGGTTTTAGTTTTAGGTATGGATTGTCTATTGGGTTCTTGAGCCTAGGACTCCTATTTTCTCTGTATTACTTTTGTAATATGTGCTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.14

Weight (kDa)

9.07

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 4 cut(s) 83, 228, 299, 670
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 136, 154
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 335, 632
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 7 cut(s) 99, 128, 163, 186, 349, 351, 462
AlwNI CAGNNNCTG 1 cut(s) 624
AoxI GGCC 2 cut(s) 560, 615
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 4 cut(s) 83, 228, 299, 670
AspA2I CCTAGG 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 151, 271, 598
AvaII GGWCC 1 cut(s) 430
AvrII CCTAGG 1 cut(s) 733
BbvI GCAGC 1 cut(s) 401
BccI CCATC 2 cut(s) 273, 536
BciT130I CCWGG 1 cut(s) 340
BcoDI GTCTC 7 cut(s) 99, 128, 163, 186, 349, 351, 462
BfaI CTAG 2 cut(s) 656, 734
BfrI CTTAAG 1 cut(s) 20
BglII AGATCT 2 cut(s) 169, 236
BisI GCNGC 2 cut(s) 390, 615
BlnI CCTAGG 1 cut(s) 733
BlsI GCNGC 2 cut(s) 391, 616
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 436
BoxI GACNNNNGTC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 748
BsaI GGTCTC 2 cut(s) 163, 462
BsaJI CCNNGG 4 cut(s) 338, 339, 609, 733
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 154
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 338, 339, 609, 733
BseGI GGATG 2 cut(s) 293, 574
BseLI CCNNNNNNNGG 2 cut(s) 136, 154
BseMII CTCAG 2 cut(s) 140, 174
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 2 cut(s) 562, 617
BsiSI CCGG 3 cut(s) 98, 398, 428
BslI CCNNNNNNNGG 2 cut(s) 136, 154
BsmAI GTCTC 7 cut(s) 99, 128, 163, 186, 349, 351, 462
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 562, 617
Bso31I GGTCTC 2 cut(s) 163, 462
Bsp143I GATC 2 cut(s) 169, 236
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 1 cut(s) 614
BspANI GGCC 2 cut(s) 562, 617
BspCNI CTCAG 2 cut(s) 141, 173
BspTI CTTAAG 1 cut(s) 20
BspTNI GGTCTC 2 cut(s) 163, 462
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 4 cut(s) 338, 339, 609, 733
BssMI GATC 2 cut(s) 169, 236
BssT1I CCWWGG 2 cut(s) 609, 733
Bst2UI CCWGG 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 632
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 520, 619
BstDEI CTNAG 3 cut(s) 149, 160, 482
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 293, 574
BstKTI GATC 2 cut(s) 172, 239
BstMAI GTCTC 7 cut(s) 99, 128, 163, 186, 349, 351, 462
BstMBI GATC 2 cut(s) 169, 236
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 340
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 169, 236
BstYI RGATCY 2 cut(s) 169, 236
BsuRI GGCC 2 cut(s) 562, 617
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 293, 574
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 520, 619
CaiI CAGNNNCTG 1 cut(s) 624
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 395
CviAII CATG 3 cut(s) 379, 450, 610
CviJI RGCY 8 cut(s) 17, 153, 562, 617, 621, 679, 687, 732
CviKI_1 RGCY 8 cut(s) 17, 153, 562, 617, 621, 679, 687, 732
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 3 cut(s) 149, 160, 482
DpnI GATC 2 cut(s) 171, 238
DpnII GATC 2 cut(s) 169, 236
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 2 cut(s) 609, 733
Eco31I GGTCTC 2 cut(s) 163, 462
Eco47I GGWCC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 609, 733
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 2 cut(s) 609, 733
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 382, 453, 613
FaiI YATR 7 cut(s) 66, 179, 380, 451, 611, 708, 770
FatI CATG 3 cut(s) 378, 449, 609
Fnu4HI GCNGC 2 cut(s) 390, 615
FokI GGATG 2 cut(s) 280, 581
Fsp4HI GCNGC 2 cut(s) 390, 615
FspBI CTAG 2 cut(s) 656, 734
GluI GCNGC 2 cut(s) 390, 615
HaeIII GGCC 2 cut(s) 562, 617
HapII CCGG 3 cut(s) 98, 398, 428
HgaI GACGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 382, 453, 613
HinfI GANTC 2 cut(s) 577, 738
HpaII CCGG 3 cut(s) 98, 398, 428
HphI GGTGA 3 cut(s) 151, 271, 598
Hpy166II GTNNAC 3 cut(s) 364, 420, 555
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 7 cut(s) 44, 148, 234, 348, 566, 574, 727
Hpy8I GTNNAC 3 cut(s) 364, 420, 555
HpyCH4V TGCA 4 cut(s) 389, 449, 522, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 149, 160, 482
Hsp92II CATG 3 cut(s) 382, 453, 613
Kzo9I GATC 2 cut(s) 169, 236
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 656, 734
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 171, 238
MboI GATC 2 cut(s) 169, 236
MboII GAAGA 6 cut(s) 282, 317, 394, 423, 501, 649
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 2 cut(s) 169, 236
MluCI AATT 6 cut(s) 83, 216, 228, 299, 523, 670
MlyI GAGTC 1 cut(s) 732
MnlI CCTC 8 cut(s) 121, 272, 287, 293, 330, 474, 573, 632
Mph1103I ATGCAT 1 cut(s) 451
MseI TTAA 3 cut(s) 21, 36, 368
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 3 cut(s) 98, 398, 428
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 609
NdeII GATC 2 cut(s) 169, 236
NlaIII CATG 3 cut(s) 382, 453, 613
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 451
PasI CCCWGGG 1 cut(s) 339
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 2 cut(s) 391, 616
PleI GAGTC 1 cut(s) 732
PpsI GAGTC 1 cut(s) 732
PshAI GACNNNNGTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 624
PsuI RGATCY 2 cut(s) 169, 236
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 21, 36, 368
SatI GCNGC 2 cut(s) 390, 615
Sau3AI GATC 2 cut(s) 169, 236
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 732
ScrFI CCNGG 1 cut(s) 340
SetI ASST 9 cut(s) 155, 279, 322, 466, 478, 532, 655, 661, 707
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 430
SmlI CTYRAG 2 cut(s) 20, 727
SmoI CTYRAG 2 cut(s) 20, 727
Sse9I AATT 6 cut(s) 83, 216, 228, 299, 523, 670
SsiI CCGC 1 cut(s) 614
SspMI CTAG 2 cut(s) 656, 734
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 2 cut(s) 609, 733
TaqI TCGA 1 cut(s) 349
TasI AATT 6 cut(s) 83, 216, 228, 299, 523, 670
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 21, 36, 368
Tru9I TTAA 3 cut(s) 21, 36, 368
TscAI CASTG 1 cut(s) 440
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 6 cut(s) 53, 89, 212, 282, 395, 766
TspRI CASTG 1 cut(s) 440
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 4 cut(s) 83, 228, 299, 670
XmaJI CCTAGG 1 cut(s) 733
XspI CTAG 2 cut(s) 656, 734
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.