Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008888

Physical Location & Seq

Genomic Coordinates Reverse (-)

2118395 .. 2120613

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTTTGGAGGAGCTTGTGCTTTCTATGAATGGATTTCACGGTCTAATGCCTGTTGAAATTGTGGGCTATCAGAATTTGACTCTGATTGATCTAAGCACAAATAGTCTTTATGGGTCTATTCCTCAGAGAATGGGAGAGCTTTCCAAGCTGGAAGTTTTGATTCTATCTTCAAATATGTTGACTGGGAAAATCCCACAAAGCCTTTCCAACATCACTAGTCTCAAGCGTTTTGCAGCACATTCAAACTATTTCCGGGGTGCACTTTCCGGTGCAATTACAAAGCATTTGGCAAGTTTGGATCTTATACCATCGGACCTTTTGTCTCCATTGAATTTGCGGATTGTGGATTTGTCTAATAATGGCTTAAGTGGGTCGATACCTACAGCTATATCCCCAAGTCTGGTCAGATTGAGTGAACTACAGTACAGAACATCACAAAAGACTTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

7.91

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008888)

Species	Orthologous Gene IDs
malus_domestica	MD05G1039000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316131 RchiOBHm_Chr1g0316221 RchiOBHm_Chr1g0316231 RchiOBHm_Chr1g0316271 RchiOBHm_Chr2g0168401 RchiOBHm_Chr4g0418911 RchiOBHm_Chr4g0428241 RchiOBHm_Chr6g0256141 RchiOBHm_Chr6g0256231 RchiOBHm_Chr6g0256321 RchiOBHm_Chr6g0276131 RchiOBHm_Chr7g0203941 RchiOBHm_Chr7g0242941
rosa_laevigata	RLG00000015040 RLG00000030684 RLG00000030685 RLG00000030691
rosa_roxburghii	Rroxscaffold_4G00315440
rosa_rugosa	Rorug01G0009500
rosa_samantha	Rh1BG014300 Rh1DG014100
rosa_wichuraiana	Rw1G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	76, 334
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	59, 174, 246, 334
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	4 cut(s)	16, 142, 151, 389
AluI	AGCT	4 cut(s)	16, 142, 151, 389
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	227, 330
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	309
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	76, 334
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	227, 330
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	2 cut(s)	384, 422
BfrI	CTTAAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	316
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	256, 270
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	227, 330
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	91, 301
BspACI	CCGC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	91, 301
Bst4CI	ACNGT	2 cut(s)	44, 426
BstAFI	CTTAAG	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	95, 126
BstKTI	GATC	2 cut(s)	94, 304
BstMAI	GTCTC	2 cut(s)	227, 330
BstMBI	GATC	2 cut(s)	91, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	384, 422
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	427
CviJI	RGCY	7 cut(s)	16, 69, 142, 151, 204, 366, 389
CviKI_1	RGCY	7 cut(s)	16, 69, 142, 151, 204, 366, 389
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	95, 126
DpnI	GATC	2 cut(s)	93, 303
DpnII	GATC	2 cut(s)	91, 301
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	316
FaiI	YATR	5 cut(s)	29, 114, 179, 308, 392
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	237
HapII	CCGG	2 cut(s)	256, 270
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	82, 163
HpaII	CCGG	2 cut(s)	256, 270
Hpy166II	GTNNAC	3 cut(s)	183, 263, 419
Hpy188I	TCNGA	5 cut(s)	75, 87, 129, 316, 410
Hpy8I	GTNNAC	3 cut(s)	183, 263, 419
HpyCH4III	ACNGT	2 cut(s)	44, 426
HpyCH4V	TGCA	3 cut(s)	236, 263, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	95, 126
Kzo9I	GATC	2 cut(s)	91, 301
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	66, 137, 171, 269, 283, 389
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	219
MalI	GATC	2 cut(s)	93, 303
MboI	GATC	2 cut(s)	91, 301
MboII	GAAGA	1 cut(s)	162
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	4 cut(s)	60, 76, 276, 334
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	4, 135
MseI	TTAA	2 cut(s)	368, 454
MspCI	CTTAAG	1 cut(s)	367
MspI	CCGG	2 cut(s)	256, 270
MspR9I	CCNGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	148
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	91, 301
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	368, 454
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	91, 301
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	6 cut(s)	18, 144, 153, 321, 385, 391
SfcI	CTRYAG	2 cut(s)	384, 422
SinI	GGWCC	1 cut(s)	316
SmlI	CTYRAG	2 cut(s)	224, 367
SmoI	CTYRAG	2 cut(s)	224, 367
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	4 cut(s)	60, 76, 276, 334
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	44, 426
TaqI	TCGA	1 cut(s)	377
TasI	AATT	4 cut(s)	60, 76, 276, 334
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	368, 454
Tru9I	TTAA	2 cut(s)	368, 454
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	76, 334
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.