RchiOBHm_Chr1g0316131

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008888
Physical Location & Seq
Reverse (-)
3405992 .. 3407002
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54659

Sequence Viewer

Length: 399 bp
ATGATGCCTACATCTTTGCAAATTGCTTTAAATCTCAGCAGCAACCTTTTTGAAGGACCAATTCCGAATCATTTTTCCCGCCTCACTGGTTTAGAAATTCTGGATCTCTCAAATAACAAATTCTCAGGTCAGATACCCTCATTTTTAGCGGAATTGGGAGCCTTGACACAATTGTCACTTTCTAACAACCAGCTCTCTGGAGTGATTCCACACTGCAATTCTTGGGTCATGGTCTACACAAGTGGAAATGAGGGTCTGATAAACGCTCCAAGCCCACCACCAGAGATGAAAGCAAGATCACATCATTTCAAAATTGTGGAACTGAGCTCCTTGTCATTTTATGTATTTTTTGTTGTTTCCTTTTGGTTTTTTTCGTTCGATACTTGCCGTAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.74

Weight (kDa)

6.39

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 10 - 65 6.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 79, 149
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 96, 119
AgsI TTSAA 2 cut(s) 53, 310
AluBI AGCT 2 cut(s) 193, 327
AluI AGCT 2 cut(s) 193, 327
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 2 cut(s) 96, 119
AspS9I GGNCC 1 cut(s) 56
AvaII GGWCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 372
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 49, 138, 314
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 103, 296
BspACI CCGC 2 cut(s) 79, 149
BspCNI CTCAG 3 cut(s) 48, 137, 315
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 91
BssMI GATC 2 cut(s) 103, 296
BstDEI CTNAG 3 cut(s) 35, 124, 323
BstKTI GATC 2 cut(s) 106, 299
BstMBI GATC 2 cut(s) 103, 296
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 84, 211
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 1 cut(s) 229
CviJI RGCY 5 cut(s) 161, 193, 273, 327, 394
CviKI_1 RGCY 5 cut(s) 161, 193, 273, 327, 394
DdeI CTNAG 3 cut(s) 35, 124, 323
DpnI GATC 2 cut(s) 105, 298
DpnII GATC 2 cut(s) 103, 296
DraI TTTAAA 1 cut(s) 30
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 230, 342, 397
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 86
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 219
Hin1II CATG 1 cut(s) 232
HinfI GANTC 2 cut(s) 67, 205
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 66, 132, 258
Hpy188III TCNNGA 2 cut(s) 101, 198
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 19, 216
HpyF3I CTNAG 3 cut(s) 35, 124, 323
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 103, 296
LmnI GCTCC 3 cut(s) 158, 271, 332
LpnPI CCDG 6 cut(s) 72, 86, 111, 183, 203, 294
Lsp1109I GCAGC 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 174
MalI GATC 2 cut(s) 105, 298
MboI GATC 2 cut(s) 103, 296
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 8 cut(s) 21, 60, 96, 119, 152, 170, 217, 312
MnlI CCTC 3 cut(s) 92, 148, 244
MseI TTAA 1 cut(s) 29
MunI CAATTG 1 cut(s) 170
NdeII GATC 2 cut(s) 103, 296
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 67, 205
PkrI GCNGC 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 103
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 103, 296
Sau96I GGNCC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 329
SetI ASST 4 cut(s) 48, 130, 195, 329
SinI GGWCC 1 cut(s) 56
Sse9I AATT 8 cut(s) 21, 60, 96, 119, 152, 170, 217, 312
SsiI CCGC 2 cut(s) 79, 149
SstI GAGCTC 1 cut(s) 329
TaqI TCGA 1 cut(s) 378
TasI AATT 8 cut(s) 21, 60, 96, 119, 152, 170, 217, 312
TfiI GAWTC 2 cut(s) 67, 205
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 91, 218
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 91, 218
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 96, 119
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.