Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008888

Physical Location & Seq

Genomic Coordinates Reverse (-)

54263556 .. 54264354

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCTCTTTTCCATTTTATCTCTCCTTGTGCTTGCCCAATTTCTCATCAGATTTCCAGATCTATTCTCAAACCTCCCATCCTCCTCCATCTCAGACACCTCACCCTCTCATCTTCATCCGACTTTTCTCTTTTTCCACAACCCCATCTTCACTTCCAACCCTTGGAGTCTCGACAGGGATCTGTTCACTTAACTTCACACCTGATGATTGCAGCAGTACTGGCAAGCCACCGCAGTGTGTGGACATCGCCGGACCAGTGGTGTTGTGATGCATGGTGGTCTCCACCTCCACGACTACCTTTACTGAGTTCTATGTTTTTCTTGTTTCTTCCTGTGCATGCAATTTCAGTGTGGAGAATGATGGTGGAGAGTTATTTGGCCTCTGGAAGTCAAGCTTCTGTCGGAGCTCATCTGGCCATGGTGGCACCCACGGCGGCCAGCCTGTGTTGCAGCGAAGACTTTGGTTTTAGATCTAGGTTTTTTGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.22

Weight (kDa)

7.75

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008888)

Species	Orthologous Gene IDs
malus_domestica	MD05G1039000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316131 RchiOBHm_Chr1g0316221 RchiOBHm_Chr1g0316231 RchiOBHm_Chr1g0316271 RchiOBHm_Chr2g0168401 RchiOBHm_Chr4g0418911 RchiOBHm_Chr4g0428241 RchiOBHm_Chr6g0256141 RchiOBHm_Chr6g0256231 RchiOBHm_Chr6g0256321 RchiOBHm_Chr6g0276131 RchiOBHm_Chr7g0203941 RchiOBHm_Chr7g0242941
rosa_laevigata	RLG00000015040 RLG00000030684 RLG00000030685 RLG00000030691
rosa_roxburghii	Rroxscaffold_4G00315440
rosa_rugosa	Rorug01G0009500
rosa_samantha	Rh1BG014300 Rh1DG014100
rosa_wichuraiana	Rw1G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	2 cut(s)	232, 434
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	2 cut(s)	414, 435
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	163
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	395, 407
AluI	AGCT	2 cut(s)	395, 407
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	9, 174, 285
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	3 cut(s)	378, 414, 435
ApeKI	GCWGC	2 cut(s)	212, 450
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	224, 462
BccI	CCATC	4 cut(s)	86, 96, 153, 355
BceAI	ACGGC	1 cut(s)	447
BcoDI	GTCTC	3 cut(s)	9, 174, 285
BfaI	CTAG	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	2 cut(s)	59, 470
BisI	GCNGC	3 cut(s)	213, 435, 451
BlsI	GCNGC	3 cut(s)	214, 436, 452
BmcAI	AGTACT	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	426
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	162, 417, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	225, 256
BseDI	CCNNGG	3 cut(s)	162, 417, 429
BseGI	GGATG	2 cut(s)	78, 116
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	106, 296
BseNI	ACTGG	2 cut(s)	225, 256
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	224, 462
BshFI	GGCC	3 cut(s)	380, 416, 437
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	3 cut(s)	9, 174, 285
BsnI	GGCC	3 cut(s)	380, 416, 437
Bso31I	GGTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	59, 179, 470
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	2 cut(s)	232, 434
BspANI	GGCC	3 cut(s)	380, 416, 437
BspCNI	CTCAG	2 cut(s)	105, 297
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	225, 256
BssECI	CCNNGG	3 cut(s)	162, 417, 429
BssMI	GATC	3 cut(s)	59, 179, 470
BssT1I	CCWWGG	2 cut(s)	162, 417
BstC8I	GCNNGC	4 cut(s)	34, 226, 339, 439
BstDEI	CTNAG	2 cut(s)	92, 305
BstDSI	CCRYGG	2 cut(s)	417, 429
BstF5I	GGATG	2 cut(s)	78, 116
BstKTI	GATC	3 cut(s)	62, 182, 473
BstMAI	GTCTC	3 cut(s)	9, 174, 285
BstMBI	GATC	3 cut(s)	59, 179, 470
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 413, 422, 431, 447
BstNSI	RCATGY	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	224, 462
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	3 cut(s)	59, 179, 470
BstYI	RGATCY	3 cut(s)	59, 179, 470
BsuRI	GGCC	3 cut(s)	380, 416, 437
BtgI	CCRYGG	2 cut(s)	417, 429
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	78, 116
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	3 cut(s)	241, 263, 354
Cac8I	GCNNGC	4 cut(s)	34, 226, 339, 439
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	3 cut(s)	273, 338, 418
CviJI	RGCY	7 cut(s)	228, 380, 395, 407, 416, 437, 441
CviKI_1	RGCY	7 cut(s)	228, 380, 395, 407, 416, 437, 441
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	92, 305
DpnI	GATC	3 cut(s)	61, 181, 472
DpnII	GATC	3 cut(s)	59, 179, 470
EaeI	YGGCCR	2 cut(s)	414, 435
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	162, 417
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	162, 417
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	162, 417
FaeI	CATG	3 cut(s)	276, 341, 421
FaiI	YATR	4 cut(s)	274, 314, 339, 419
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FatI	CATG	3 cut(s)	272, 337, 417
Fnu4HI	GCNGC	3 cut(s)	213, 435, 451
FokI	GGATG	2 cut(s)	65, 103
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	3 cut(s)	213, 435, 451
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	3 cut(s)	213, 435, 451
HaeIII	GGCC	3 cut(s)	380, 416, 437
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	3 cut(s)	276, 341, 421
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	2 cut(s)	167, 485
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	187, 243
Hpy188I	TCNGA	4 cut(s)	51, 95, 121, 404
Hpy188III	TCNNGA	4 cut(s)	57, 171, 384, 489
Hpy8I	GTNNAC	2 cut(s)	187, 243
HpyCH4V	TGCA	5 cut(s)	212, 272, 337, 341, 450
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 413, 422, 431, 447
HpyF3I	CTNAG	2 cut(s)	92, 305
Hsp92II	CATG	3 cut(s)	276, 341, 421
Kzo9I	GATC	3 cut(s)	59, 179, 470
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	2 cut(s)	224, 462
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	474
MalI	GATC	3 cut(s)	61, 181, 472
MboI	GATC	3 cut(s)	59, 179, 470
MboII	GAAGA	4 cut(s)	105, 140, 320, 467
MflI	RGATCY	3 cut(s)	59, 179, 470
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	2 cut(s)	39, 342
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	3 cut(s)	144, 181, 382
MnlI	CCTC	7 cut(s)	84, 92, 95, 110, 116, 297, 391
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	221, 413, 422, 431, 447
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	59, 179, 470
NlaIII	CATG	3 cut(s)	276, 341, 421
NlaIV	GGNNCC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	341
OliI	CACNNNNGTG	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	214, 436, 452
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	3 cut(s)	59, 179, 470
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	3 cut(s)	213, 435, 451
Sau3AI	GATC	3 cut(s)	59, 179, 470
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	8 cut(s)	76, 102, 204, 289, 301, 397, 409, 479
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	2 cut(s)	39, 342
SsiI	CCGC	2 cut(s)	232, 434
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	162, 417
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	39, 342
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	3 cut(s)	241, 263, 354
TseI	GCWGC	2 cut(s)	212, 450
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	241, 263, 354
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.