RLG00000030684

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008888
Physical Location & Seq
Forward (+)
65910683 .. 65911207
525 bp
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UTR
Exon/CDS
Intron
RLM00000030684

Sequence Viewer

Length: 525 bp
ATGATCAATCTCTCCAAGAGTGTAAACACTACTACTTCATGGGATATCAACTATGAACCAAACCCATGTCTATGGGAAGAAGTCGAGTACAATCCCCTGAACCATTCATCTGTAACCCAAATTTCTCAATCAAATTGGTCTCTATCTTCCTCAGATTTGCTTCCAATTATTTGCCAAATTGAGTCTTTGCAGATTCTTGATGTGTCACACAACCTTCTGACTACAATCCCATTCGAGTTTATCACAGCTTGTGGAAGCATAGATGGGCTAAAGCTACTCAATTTCAGTTATAATAATTTGACTGATTCCTTGCCTAGCTTTGTTGGGTTTGCTGTGTTTGAGTTCTTGGACCTCTCTCATAATAGTTTGTTTGGGAGAATTTCCTTAGATGGATTGGTCGGGCTTAAAAGCTTGAACCTTAGCTTCGACCATTTGGGAGAGTCTGTTCCTACTCATGTTGGGAAATGCATGGTTTTGGAGGAGATTGTGCTTTCTAAGAATGGTTCATGGTGTAATGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.29

Weight (kDa)

4.47

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 62 - 123 3.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AcsI RAATTY 2 cut(s) 120, 378
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 415
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 5 cut(s) 248, 274, 318, 411, 423
AluI AGCT 5 cut(s) 248, 274, 318, 411, 423
Alw26I GTCTC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 120, 378
AspS9I GGNCC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 349
BccI CCATC 2 cut(s) 257, 383
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 144
BssMI GATC 1 cut(s) 3
BstDEI CTNAG 4 cut(s) 151, 385, 419, 495
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 3
BstXI CCANNNNNNTGG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 88
CviAII CATG 5 cut(s) 39, 66, 455, 469, 507
CviJI RGCY 7 cut(s) 248, 268, 274, 318, 403, 411, 423
CviKI_1 RGCY 7 cut(s) 248, 268, 274, 318, 403, 411, 423
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 4 cut(s) 151, 385, 419, 495
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 470
FaeI CATG 5 cut(s) 42, 69, 458, 472, 510
FatI CATG 5 cut(s) 38, 65, 454, 468, 506
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 1 cut(s) 315
Hin1II CATG 5 cut(s) 42, 69, 458, 472, 510
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 4 cut(s) 182, 193, 305, 440
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 154, 219
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 190, 468
HpyF3I CTNAG 4 cut(s) 151, 385, 419, 495
Hsp92II CATG 5 cut(s) 42, 69, 458, 472, 510
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 110
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 112, 204
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 89, 138
MluCI AATT 7 cut(s) 120, 133, 165, 177, 280, 295, 378
MlyI GAGTC 2 cut(s) 191, 449
MnlI CCTC 3 cut(s) 160, 362, 472
Mph1103I ATGCAT 1 cut(s) 470
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 70
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 42, 69, 458, 472, 510
NmuCI GTSAC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 470
PfeI GAWTC 2 cut(s) 193, 305
PleI GAGTC 2 cut(s) 190, 448
PpsI GAGTC 2 cut(s) 190, 448
PsiI TTATAA 1 cut(s) 291
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 2 cut(s) 191, 449
SetI ASST 8 cut(s) 216, 250, 276, 320, 354, 413, 420, 425
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 7 cut(s) 120, 133, 165, 177, 280, 295, 378
SspMI CTAG 1 cut(s) 315
TaqI TCGA 3 cut(s) 84, 234, 426
TasI AATT 7 cut(s) 120, 133, 165, 177, 280, 295, 378
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 2 cut(s) 193, 305
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 4 cut(s) 27, 69, 96, 495
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 2 cut(s) 120, 378
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.