RLG00000030691

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008888
Physical Location & Seq
Forward (+)
65999925 .. 66002421
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030691

Sequence Viewer

Length: 678 bp
ATGATCAATCTCTCCAAGAGTCTAAACACTACTACATGGTCATGGGATATCGACCATGAACCAAACCCATGTCTATGGGAAGGAGTCGAGTGCAATCCCCTGAACCATTCATCTGTAACCCAAATTTCTCTATCAAATTGGTCTCTATATTCCTCGGATTTTCTTCCAATTGTTTGCCAAATTGAGTCCTTGCAGATTCTTGATGTGTCACACAACCTACTTACTGCAATCCCATCTGAGTTTATTACAGCTTGTGGAAGCATAGATGGGCTAAAGCTACTCAATTTCAGTTATAACGATTTGACTGATTCCTTGCCTAGCTTTGTTGGGTTTGCTGGGTTGGAGTTCTTGGACCTCTCTCATAACAGTTTGTTTGGGAGCATTTCCTTGGAGCTCGATGGGTTGATTGGGCTTAAAAGCTTGAACCTTAGCTTCAACCATTTCGGAGGGTCTGTTCCTAATCATCTTGGGATATGCATGGTTTTGGAGGAGCTTGCGCTTTCTAACAATGGATTTCACGTGATTTGCGTTTTGATTGGTCCAGTTTGTGACGAGAAGATTGGGTTGAACACAAGTGGAACAGATAGAGGTTCTAGGCGGTTGGTTGGGCTGATTGGGGAAAATGGTGGAGCTGCAGACGCCAAAAATCTACGGGTGAAGCTATACTTGAACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

24.42

Weight (kDa)

4.78

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 63 - 124 8.3e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AciI CCGC 1 cut(s) 598
AcsI RAATTY 1 cut(s) 123
AcvI CACGTG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 639
AgsI TTSAA 4 cut(s) 424, 436, 568, 670
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 9 cut(s) 251, 277, 321, 394, 420, 432, 493, 632, 661
AluI AGCT 9 cut(s) 251, 277, 321, 394, 420, 432, 493, 632, 661
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 352, 539
AsuHPI GGTGA 1 cut(s) 667
AvaII GGWCC 2 cut(s) 352, 539
BanII GRGCYC 1 cut(s) 396
BbrPI CACGTG 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 619
BccI CCATC 3 cut(s) 241, 260, 392
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 318, 594
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme18I GGWCC 2 cut(s) 352, 539
BmgT120I GGNCC 2 cut(s) 352, 539
Bpu10I CCTNAGC 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 153, 387
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bse1I ACTGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 153, 387
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 598
BspCNI CTCAG 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 153, 387
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 2 cut(s) 237, 428
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 495
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 2 cut(s) 352, 539
CseI GACGC 1 cut(s) 647
CviAII CATG 5 cut(s) 36, 42, 56, 69, 478
DdeI CTNAG 2 cut(s) 237, 428
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 352, 539
Eco53kI GAGCTC 1 cut(s) 394
Eco72I CACGTG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 394
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 5 cut(s) 39, 45, 59, 72, 481
FalI AAGNNNNNCTT 1 cut(s) 650
FatI CATG 5 cut(s) 35, 41, 55, 68, 477
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 633
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 2 cut(s) 318, 594
GlaI GCGC 1 cut(s) 498
GluI GCNGC 1 cut(s) 633
GsaI CCCAGC 1 cut(s) 339
HgaI GACGC 1 cut(s) 647
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 5 cut(s) 39, 45, 59, 72, 481
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 5 cut(s) 19, 84, 185, 196, 308
HphI GGTGA 1 cut(s) 667
Hpy188I TCNGA 3 cut(s) 157, 238, 446
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 93, 193, 227, 477, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 2 cut(s) 237, 428
HpySE526I ACGT 1 cut(s) 519
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 5 cut(s) 39, 45, 59, 72, 481
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 4 cut(s) 378, 391, 490, 629
LpnPI CCDG 3 cut(s) 113, 321, 555
Lsp1109I GCAGC 1 cut(s) 619
MaeI CTAG 2 cut(s) 318, 594
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 115, 207, 548
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 155, 568
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 5 cut(s) 123, 136, 168, 180, 283
MlyI GAGTC 3 cut(s) 28, 93, 194
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 5 cut(s) 163, 365, 440, 481, 581
Mph1103I ATGCAT 1 cut(s) 479
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 40, 73
MunI CAATTG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 638
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 39, 45, 59, 72, 481
NmuCI GTSAC 2 cut(s) 207, 548
NsiI ATGCAT 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PfeI GAWTC 2 cut(s) 196, 308
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 3 cut(s) 27, 92, 193
PmaCI CACGTG 1 cut(s) 520
PmlI CACGTG 1 cut(s) 520
PpsI GAGTC 3 cut(s) 27, 92, 193
Ppu21I YACGTR 1 cut(s) 520
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 396
PspCI CACGTG 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 335
PspPI GGNCC 2 cut(s) 352, 539
PstI CTGCAG 1 cut(s) 637
RseI CAYNNNNRTG 2 cut(s) 40, 73
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 352, 539
SchI GAGTC 3 cut(s) 28, 93, 194
SduI GDGCHC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 2 cut(s) 352, 539
SmiMI CAYNNNNRTG 2 cut(s) 40, 73
Sse9I AATT 5 cut(s) 123, 136, 168, 180, 283
SsiI CCGC 1 cut(s) 598
SspMI CTAG 2 cut(s) 318, 594
SstI GAGCTC 1 cut(s) 396
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 522
TaqI TCGA 3 cut(s) 51, 87, 396
TasI AATT 5 cut(s) 123, 136, 168, 180, 283
TfiI GAWTC 2 cut(s) 196, 308
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 2 cut(s) 207, 548
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 2 cut(s) 207, 548
TspDTI ATGAA 2 cut(s) 72, 99
VpaK11BI GGWCC 2 cut(s) 352, 539
XapI RAATTY 1 cut(s) 123
XspI CTAG 2 cut(s) 318, 594
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.