Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008888

Physical Location & Seq

Genomic Coordinates Forward (+)

65911281 .. 65911646

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAGAGCTTTCCAAGCTGGAAGTAGAGTCAAAACCTTCAAATATGTTGACTGGGAAAATTCCACAAAGCCTATCCAACATCACAAGCCTCAAGCGTTTTGCAGCACATTCAAATTATTTCCGGGGTCCACTTTCCGGTGCAATTACAAAGCATTTGGAAAGCTTGGATCTTAGTAATTCCCTTAGTGGGTGGATACCATCTGACCTTTTGTCTCCATTGAATTTGCGGGCTATGGATTTGTTTAATAATGGCTTAAGTGGGTCGATACCTACAGCTATATCCCCAAGTCCGGCCAGAGTAAGATTGGGAAACAATGAGTTGATCAGGTCCGTCCCTGCCACGCTTGCCACTATGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

9.98

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008888)

Species	Orthologous Gene IDs
malus_domestica	MD05G1039000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316131 RchiOBHm_Chr1g0316221 RchiOBHm_Chr1g0316231 RchiOBHm_Chr1g0316271 RchiOBHm_Chr2g0168401 RchiOBHm_Chr4g0418911 RchiOBHm_Chr4g0428241 RchiOBHm_Chr6g0256141 RchiOBHm_Chr6g0256231 RchiOBHm_Chr6g0256321 RchiOBHm_Chr6g0276131 RchiOBHm_Chr7g0203941 RchiOBHm_Chr7g0242941
rosa_laevigata	RLG00000015040 RLG00000030684 RLG00000030685 RLG00000030691
rosa_roxburghii	Rroxscaffold_4G00315440
rosa_rugosa	Rorug01G0009500
rosa_samantha	Rh1BG014300 Rh1DG014100
rosa_wichuraiana	Rw1G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	60, 223
AfiI	CCNNNNNNNGG	4 cut(s)	137, 189, 292, 357
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	42, 114, 223
AhdI	GACNNNNNGTC	1 cut(s)	211
AluBI	AGCT	4 cut(s)	10, 19, 165, 278
AluI	AGCT	4 cut(s)	10, 19, 165, 278
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	60, 223
AspS9I	GGNCC	2 cut(s)	128, 330
AsuC2I	CCSGG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	128, 330
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	2 cut(s)	128, 330
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	128, 330
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 189, 292, 357
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	4 cut(s)	137, 189, 292, 357
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	124, 138, 293
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	137, 189, 292, 357
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	169, 324
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	169, 324
BstAFI	CTTAAG	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	231, 348
BstDEI	CTNAG	2 cut(s)	173, 185
BstKTI	GATC	2 cut(s)	172, 327
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	169, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 347
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	231, 348
Cfr13I	GGNCC	2 cut(s)	128, 330
CviJI	RGCY	9 cut(s)	10, 19, 72, 90, 165, 233, 255, 278, 296
CviKI_1	RGCY	9 cut(s)	10, 19, 72, 90, 165, 233, 255, 278, 296
DdeI	CTNAG	2 cut(s)	173, 185
DpnI	GATC	2 cut(s)	171, 326
DpnII	GATC	2 cut(s)	169, 324
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	128, 330
FaiI	YATR	4 cut(s)	47, 236, 281, 356
FaqI	GGGAC	1 cut(s)	320
FauI	CCCGC	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	3 cut(s)	124, 138, 293
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	124, 138, 293
Hpy166II	GTNNAC	2 cut(s)	51, 131
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	51, 131
HpyAV	CCTTC	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	104, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 347
HpyF3I	CTNAG	2 cut(s)	173, 185
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	169, 324
LpnPI	CCDG	8 cut(s)	5, 39, 137, 151, 306, 310, 313, 351
Lsp1109I	GCAGC	1 cut(s)	116
MalI	GATC	2 cut(s)	171, 326
MboI	GATC	2 cut(s)	169, 324
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	5 cut(s)	60, 115, 144, 178, 223
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	101, 351
MseI	TTAA	2 cut(s)	246, 257
MspCI	CTTAAG	1 cut(s)	256
MspI	CCGG	3 cut(s)	124, 138, 293
MspR9I	CCNGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	16, 347
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	169, 324
NlaIV	GGNNCC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	128, 330
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	246, 257
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	169, 324
Sau96I	GGNCC	2 cut(s)	128, 330
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	8 cut(s)	12, 21, 40, 167, 210, 274, 280, 332
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	128, 330
SmlI	CTYRAG	2 cut(s)	92, 256
SmoI	CTYRAG	2 cut(s)	92, 256
Sse9I	AATT	5 cut(s)	60, 115, 144, 178, 223
SsiI	CCGC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	266
TasI	AATT	5 cut(s)	60, 115, 144, 178, 223
Tru1I	TTAA	2 cut(s)	246, 257
Tru9I	TTAA	2 cut(s)	246, 257
TseI	GCWGC	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	322
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	128, 330
XapI	RAATTY	2 cut(s)	60, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.