Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008888

Physical Location & Seq

Genomic Coordinates Reverse (-)

60961186 .. 60965111

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGAGAGGCGATTGGCCTAGAGTTTGTGAGAACAAGTTTTGTCCCAACTATGGAGCTCAGTGCAGCTTCTATGGTTCACAGCAGGGGCATTGTGTTTTATCTACAGAAGCAGGAAGGTTGGAAGAATTTCATGGTGGTGTTGTTGGCCACCTGAGATATCAAAACTATGATGGAGGAAATGCTCACTTGATTTGCGTTTTGATTGGTCCAGTTTGTGATGAGAAGATTGGGTTGAACACAAGTGGAACAGATAGAGGTTCTGGGCGGTTGGTTGGGCTGATTGGGGAAAATGGTGGAGCTGCAGACGCCAAAAATCTACGGGTGAAGCTATACTTGAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

6.49

Isoelectric Point (pI)

18.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008888)

Species	Orthologous Gene IDs
malus_domestica	MD05G1039000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316131 RchiOBHm_Chr1g0316221 RchiOBHm_Chr1g0316231 RchiOBHm_Chr1g0316271 RchiOBHm_Chr2g0168401 RchiOBHm_Chr4g0418911 RchiOBHm_Chr4g0428241 RchiOBHm_Chr6g0256141 RchiOBHm_Chr6g0256231 RchiOBHm_Chr6g0256321 RchiOBHm_Chr6g0276131 RchiOBHm_Chr7g0203941 RchiOBHm_Chr7g0242941
rosa_laevigata	RLG00000015040 RLG00000030684 RLG00000030685 RLG00000030691
rosa_roxburghii	Rroxscaffold_4G00315440
rosa_rugosa	Rorug01G0009500
rosa_samantha	Rh1BG014300 Rh1DG014100
rosa_wichuraiana	Rw1G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	238, 340
AluBI	AGCT	4 cut(s)	59, 69, 302, 331
AluI	AGCT	4 cut(s)	59, 69, 302, 331
Alw21I	GWGCWC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	17, 148
ApeKI	GCWGC	2 cut(s)	66, 302
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	78, 289
BccI	CCATC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	105, 303
BisI	GCNGC	2 cut(s)	67, 303
BlsI	GCNGC	2 cut(s)	68, 304
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	74, 146
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	78, 289
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	19, 150
BsiHKAI	GWGCWC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	19, 150
Bsp1286I	GDGCHC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	19, 150
BspCNI	CTCAG	2 cut(s)	73, 147
BspMAI	CTGCAG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	60, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	105, 303
BstV1I	GCAGC	2 cut(s)	78, 289
BsuRI	GGCC	2 cut(s)	19, 150
BtsIMutI	CAGTG	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	19, 59, 69, 150, 280, 302, 331
CviKI_1	RGCY	7 cut(s)	19, 59, 69, 150, 280, 302, 331
DdeI	CTNAG	2 cut(s)	60, 155
EaeI	YGGCCR	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	54, 75, 135, 171, 334
FalI	AAGNNNNNCTT	1 cut(s)	320
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	67, 303
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	67, 303
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	67, 303
HaeIII	GGCC	2 cut(s)	19, 150
HgaI	GACGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	66, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	60, 155
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	56, 299
LpnPI	CCDG	5 cut(s)	71, 99, 167, 225, 249
Lsp1109I	GCAGC	2 cut(s)	78, 289
MaeI	CTAG	1 cut(s)	21
MboII	GAAGA	2 cut(s)	137, 238
MhlI	GDGCHC	1 cut(s)	61
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	170, 251
Mox20I	TGGCCA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	68, 304
Psp124BI	GAGCTC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	61
SatI	GCNGC	2 cut(s)	67, 303
Sau96I	GGNCC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	61, 71, 122, 156, 262, 304, 333
SfcI	CTRYAG	2 cut(s)	105, 303
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	61
TasI	AATT	1 cut(s)	128
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	2 cut(s)	66, 302
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.