RchiOBHm_Chr1g0316271

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008888
Physical Location & Seq
Reverse (-)
3538500 .. 3539093
594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54672

Sequence Viewer

Length: 594 bp
ATGGTCAATCTCTCCAAGAGTCTAAACACCACTACTTCATGGGATTTTCTTCCAATTATTTGCCAAATTGAGTCTTTGCAGATTCTTGATGTGTCACACAACCTTCTGACTACAATCCCATTCGAGTTTATCATAGCTTGTGGAAGCATAGATGGGCTAAAGCTACTCAATTTCAGTTATAACAATTTGACTGATTCCTTGCCTAGCTTTGTTGGGTTTGCTGTGTTGGAGTTCTTGGACCTCTCTCATAACAGTTTGTTTGGGAGCTTTTCCTTAGAGTTGGATGGGTCGGTTGGGCTTAAAAGCTTGAACCTTAGCTTCAACCATTTCGGAGGGTCTGTTCCTACTCATCTTGGGAAATGCATGGTTTTAGAGGAGCTTGTGCTTTCTAAGAATGGATTTCACGGTGTAATGCCTGTTGAAATTTTGGGCTATCAGAATTTGACTCTGATTGGCTCTATTTCTCAGAGAATGGGAGAGCTTTCCAAGCTGGAAGTTGGGAAAATCCTATCCAACATCACAAGCCTCAAGCGTTTTGCAGCACATACAAACTATTTCCGGGGTCCATGTAATTACCGGATGGAACAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.77

Weight (kDa)

5.82

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 25 - 86 1.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AcsI RAATTY 2 cut(s) 423, 439
AgsI TTSAA 3 cut(s) 310, 322, 422
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 9 cut(s) 137, 163, 207, 267, 306, 318, 379, 481, 490
AluI AGCT 9 cut(s) 137, 163, 207, 267, 306, 318, 379, 481, 490
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 423, 439
AspS9I GGNCC 2 cut(s) 238, 563
AsuC2I CCSGG 1 cut(s) 560
AvaII GGWCC 2 cut(s) 238, 563
BbvI GCAGC 1 cut(s) 551
BccI CCATC 3 cut(s) 146, 278, 574
BcnI CCSGG 1 cut(s) 560
BfaI CTAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 560
Bme18I GGWCC 2 cut(s) 238, 563
BmgT120I GGNCC 2 cut(s) 238, 563
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 576
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 289, 585
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 551
BsiSI CCGG 2 cut(s) 559, 577
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 559
Bst4CI ACNGT 2 cut(s) 254, 407
BstDEI CTNAG 4 cut(s) 274, 314, 390, 465
BstF5I GGATG 2 cut(s) 289, 585
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 289, 585
Cfr13I GGNCC 2 cut(s) 238, 563
CviAII CATG 3 cut(s) 39, 364, 567
DdeI CTNAG 4 cut(s) 274, 314, 390, 465
Eco47I GGWCC 2 cut(s) 238, 563
EcoT22I ATGCAT 1 cut(s) 365
FaeI CATG 3 cut(s) 42, 367, 570
FaiI YATR 8 cut(s) 40, 134, 149, 180, 249, 365, 546, 568
FatI CATG 3 cut(s) 38, 363, 566
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 540
HapII CCGG 2 cut(s) 559, 577
Hin1II CATG 3 cut(s) 42, 367, 570
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 5 cut(s) 19, 71, 82, 194, 445
HpaII CCGG 2 cut(s) 559, 577
Hpy188I TCNGA 5 cut(s) 108, 332, 438, 450, 468
Hpy188III TCNNGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 254, 407
HpyCH4V TGCA 3 cut(s) 79, 363, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 274, 314, 390, 465
Hsp92II CATG 3 cut(s) 42, 367, 570
LmnI GCTCC 2 cut(s) 264, 376
LpnPI CCDG 4 cut(s) 429, 476, 572, 590
Lsp1109I GCAGC 1 cut(s) 551
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 93
MboII GAAGA 1 cut(s) 41
MluCI AATT 8 cut(s) 54, 66, 169, 184, 423, 439, 571, 589
MlyI GAGTC 3 cut(s) 28, 80, 439
MmeI TCCRAC 3 cut(s) 207, 261, 537
MnlI CCTC 4 cut(s) 251, 326, 367, 536
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 559, 577
MspR9I CCNGG 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 560
NlaIII CATG 3 cut(s) 42, 367, 570
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 365
PfeI GAWTC 2 cut(s) 82, 194
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 3 cut(s) 27, 79, 439
PpsI GAGTC 3 cut(s) 27, 79, 439
PsiI TTATAA 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 238, 563
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 540
Sau96I GGNCC 2 cut(s) 238, 563
SchI GAGTC 3 cut(s) 28, 80, 439
ScrFI CCNGG 1 cut(s) 560
SinI GGWCC 2 cut(s) 238, 563
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 8 cut(s) 54, 66, 169, 184, 423, 439, 571, 589
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 254, 407
TaqI TCGA 1 cut(s) 123
TasI AATT 8 cut(s) 54, 66, 169, 184, 423, 439, 571, 589
TfiI GAWTC 2 cut(s) 82, 194
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 238, 563
XapI RAATTY 2 cut(s) 423, 439
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.