Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004602

Physical Location & Seq

Genomic Coordinates Reverse (-)

17731523 .. 17736343

Gene Structure 4821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1084800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

ATGGACCACAAGGCTTGGCTTTGGAGGAAAAAATCTTCAGAGAAGACAATTCTTGCAACTAACAAAGTTGCCACTCCTTTGGGAAGAATTGAAGAAGAGGTACAGACATTTTCATATCCAGCTGAGAAAGGAAGCGAAACAGAGAGATCGAGGAAAAATCTAAATGAGAAGTTAGCTTCAGTTCTCCTAGACCGCACTGTAAAAGAAGATCCCGTTCCAGAACATGCAAAACCGGAAGAAGAAGCTATAGCAGGTGATTGTGGTGAGAAGGCAGGAGAGTCGGTTTTAAAGCAAGAATTAGAGGAACCTTTGAGGCAGGGAGTATCCACAAATGAAAGATCAACTCATTCAGATGATGCATTGAACGAATGCATGCAGCAGCTAAAGTTTGTTCGAGAAGAACAGGAGCAAAGAATACATGAAGCAGTTATGATGACATCAAGAGAGTATGAGAAGGCACAGAAAAAGTTAGAAGAGAAGTTGAGAGAGACAAGTGAACAGCTTACACACTTGGTTGCTGAAAATACTAATTTGAACAGAGCCCTTCGAGCAAAAGACAAATTGATCGAAGATTTGAATAGACACAAGTCTCAAACCGATGCAGAATTCAGTGCCCTAATGGCTAGACTGGATTCCACAGAAAAGGAAAATGCTTTTCTAAGATATGAATTTCACATGCTTGAGAAGGAACTTGAGATCCGAAGTGAGGAGATGGAATACAACCGTCGGTCAGCTGCAGAATCCCATAAACAACATTTGGAGAGTGTGAGGATAATCGCAAAGTTAGAACAAGAATGTCAGAGACTTCATCTCCTTATGCGAAAGCGGCTGCCAGGTCCTACTGCTTTGGTGAATATGAAGAGTGAGGTTCAAATGCTGGGAAGGGATCAGACTGAGATGAGAAGAAGAAAGCAGAATCATACAAGAGATATGGTTGCAAAAGATGCCAACATGGGAAATTCTCCTGAAATTTCAAATAAGAAGATGAGTCTCGTGATTGAGCAATTACGAGATTTGGAAGAAGAAAACAAAACTCTGAGAGAAATTTTAACAAAAAAAAATGCCGAACTCCTTTCTTCAAGGACCACATATTCTCGAACAGCTTCCAGATTGTCACAGGCTGAGACTCAGCTTGGAGAGCTTTCTAAATTCCATAAATCTATGGAGCTGGTACCATGTAATGACATTTCTCGATATTCAAGGTTTGACATTGGCAGTGATGATAGCTCGTCCGAATCTTGGGCTAGTGCTCTAATTTCAGAGTTGGAACATTTTAAAAACGACAGACTTAAAAGTCCACAGGAATGTTCAGACATTAGCTTAATGGATGATTTTGTTGAGATGGAGAAATTGGCAATAGTTTCTGCTGGTAAACCTCCTAACAATGGGCATCAACATTGTTTTACCGGTAGGGAGCTTGTACCAGTTGAAGTCAGTTCCAACAGTGATGAGAGAAAGCACGGCCTGTCAAAAGATTCAAGGTCAGAGAATTCTTTTGATTGGCTTCAGGTCGTTTTAAAAGCAATGTTGGAGCAAAAGAATGTTTCGAAACGAAGTTTAGATGAGCTATTTGAGGACATCAAAATTGCCTTGGGTTACATAAATCCACCAACCGACAATGGACCTCGTAGAAGTGCAGTCTCAAGGCCTCTTGCAGAATCTGATCCTGTAGATTCTTTTGGTGGAGCTTTGAGTATTGACACTTCAGTGGAAGATAGTGGCAGCCAACGTTGTCAAGATGCTTCAAGCATGAGGAATAAAATCAATAAGCAATTTGGTTGGCCGGAAGACCGACGAGATAATGGAGTGAAGGGTGCATCTGCGGAGCAGTTGTTGTGTCTGCCTTTAGTTGCTTCTTCAAAGGAAACAAATGTTCCACTTCAATTGAATATGGTGCAGGATAAACTGCAAGAAGAAAACAGCAGATTGAAAGATGAACTAAAGAATATGGAAGCTAGCCTGCAGTCAGCAACCGAAAAGAATGAAGCGTTGGTCATACAACTTCAGGAATCACAACAAAGAATTGAAATCTTAAAGACAGAAGTGGAGAGTCTGAAAGAATCAGAGGGGGTGATGGTAGACCAGATCGAAAATCAGAAGTCGATTAATGAAGATCTTGATACTCAACTGACTGTTGCCAAAGCAAAGTTGAAACAAGTCTTCCAGAAGTTTTCTTCTTTAGAAGTTGAATTGGAGGATAAACATAACTGTTGTGAAGATTTAGAAGCAACATGTCTTGAGCTTCAGCTCCAGCTACAAAGTGCTGAGAAGGAGACTCTAACGCATGGCATAAACCAAGACGAAAAGCAATCCCCTTCCGGATGGGAAATCACAACAGCTTCGGTGAAGCTGGCAGAGTGTCAAGAAACCATCCTAAACCTAGGAAAACAGATCAAGGCACTGACTACACCAAGGGAAGCACAACGTTTTGACAAGGTGTTCTCCACAACCAGCACTGCAGCCAATGCCACCAGCAATAACTTGAACAGGCGCTCTTCCCTGCTTGATCAAATGCTAGCTGAGGACAATCCCAAGTCTCCAAAAGATAATGAGACAACAACGGATGCAGATCCGCAGAAACCATCGCTTTTTCAGTCTGATAGTCACAATGCCTTGTCCACTCCTATCGCTCTGGTACATATGCCGGAAGGGCATCTAGGTTCAAGGGGTAAAGGTGGTAACAGCGCAGTTGGGAGTCTGGCTATTGTGCCGAGTAAGAAACAAGGAGGTTTTGGTTTGCTAAGGAGGCTACTGCTGCGAAGAAAGAAAGGAAGCGCCAAGAAACCCCAATCCTTGGCGAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

FPP

Protein Analysis

936

Amino Acids

105.52

Weight (kDa)

5.72

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	68 - 545	7.1e-162	Filament-like plant protein, long coiled-coil
FPP	PF05911	575 - 808	1.7e-52	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19370 AT3G19370 AT3G19370
fragaria_vesca	FvH4_2g05731 FvH4_2g05731 FvH4_2g05731 FvH4_2g05731
malus_domestica	MD05G1084800.v1.1
prunus_persica	Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1
pyrus_communis	pycom05g08380
rosa_chinensis	RchiOBHm_Chr6g0256631
rosa_laevigata	RLG00000014748
rosa_multiflora	Rmu_co8155852.1_g000001 Rmu_sc0007004.1_g000002 Rmu_sc0034019.1_g000001 Rmu_sc0034020.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042850 Rroxscaffold_7G00209150
rosa_rugosa	Rorug05G0565100 Rorug05G0565200 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh6AG083000 Rh6BG077600 Rh6CG072200 Rh6DG069400
rosa_wichuraiana	Rw6G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
AasI	GACNNNNNNGTC	1 cut(s)	1293
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	1171
AccB1I	GGYRCC	1 cut(s)	1171
AccB7I	CCANNNNNTGG	1 cut(s)	2794
AccI	GTMKAC	1 cut(s)	2079
AccIII	TCCGGA	1 cut(s)	2318
AciI	CCGC	4 cut(s)	193, 826, 1823, 2573
AclI	AACGTT	2 cut(s)	1729, 2425
AclWI	GGATC	5 cut(s)	203, 691, 894, 1658, 2564
AcoI	YGGCCR	1 cut(s)	1781
AcsI	RAATTY	7 cut(s)	605, 668, 958, 969, 1044, 1148, 1489
AcuI	CTGAAG	6 cut(s)	21, 162, 1490, 1689, 1988, 2228
AfaI	GTAC	4 cut(s)	102, 1173, 1422, 2637
AfiI	CCNNNNNNNGG	4 cut(s)	706, 1239, 1385, 2794
AflIII	ACRYGT	1 cut(s)	2231
AgeI	ACCGGT	1 cut(s)	1406
AjnI	CCWGG	1 cut(s)	832
AjuI	GAANNNNNNNTTGG	2 cut(s)	1973, 2005
AleI	CACNNNNGTG	1 cut(s)	1706
AloI	GAACNNNNNNTCC	2 cut(s)	681, 713
Alw21I	GWGCWC	1 cut(s)	1252
Alw26I	GTCTC	9 cut(s)	482, 594, 796, 995, 1118, 1645, 2267, 2541, 2546
AlwI	GGATC	5 cut(s)	203, 691, 894, 1658, 2564
AlwNI	CAGNNNCTG	1 cut(s)	1661
Aor13HI	TCCGGA	1 cut(s)	2318
AoxI	GGCC	3 cut(s)	1462, 1646, 1781
ApeKI	GCWGC	7 cut(s)	376, 379, 734, 829, 1722, 2459, 2755
ApoI	RAATTY	7 cut(s)	605, 668, 958, 969, 1044, 1148, 1489
AseI	ATTAAT	1 cut(s)	2106
AsiGI	ACCGGT	1 cut(s)	1406
Asp700I	GAANNNNTTC	1 cut(s)	1102
Asp718I	GGTACC	1 cut(s)	1171
AspA2I	CCTAGG	1 cut(s)	2380
AspLEI	GCGC	3 cut(s)	2493, 2687, 2777
AspS9I	GGNCC	4 cut(s)	4, 836, 1083, 1622
AsuHPI	GGTGA	5 cut(s)	266, 275, 862, 2083, 2356
AsuII	TTCGAA	1 cut(s)	1547
AsuNHI	GCTAGC	2 cut(s)	1955, 2515
AvaII	GGWCC	4 cut(s)	4, 836, 1083, 1622
AvrII	CCTAGG	1 cut(s)	2380
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	1171
BanII	GRGCYC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	4 cut(s)	84, 116, 1687, 1719
BauI	CACGAG	1 cut(s)	992
BbsI	GAAGAC	3 cut(s)	50, 1794, 2152
Bbv12I	GWGCWC	1 cut(s)	1252
BbvCI	CCTCAGC	1 cut(s)	2520
BbvI	GCAGC	7 cut(s)	388, 391, 721, 816, 1734, 2471, 2742
BccI	CCATC	6 cut(s)	706, 1336, 2068, 2316, 2378, 2590
BceAI	ACGGC	1 cut(s)	1477
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	334
BclI	TGATCA	1 cut(s)	2506
BcoDI	GTCTC	9 cut(s)	482, 594, 796, 995, 1118, 1645, 2267, 2541, 2546
BfaI	CTAG	7 cut(s)	188, 624, 1245, 1956, 2381, 2516, 2657
BfmI	CTRYAG	5 cut(s)	246, 735, 1668, 1961, 2457
BfoI	RGCGCY	2 cut(s)	2494, 2778
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	334
BglI	GCCNNNNNGGC	2 cut(s)	620, 2650
BglII	AGATCT	1 cut(s)	2113
BisI	GCNGC	8 cut(s)	377, 380, 735, 827, 830, 1723, 2460, 2756
BlnI	CCTAGG	1 cut(s)	2380
BlsI	GCNGC	8 cut(s)	378, 381, 736, 828, 831, 1724, 2461, 2757
Bme1390I	CCNGG	1 cut(s)	834
Bme18I	GGWCC	4 cut(s)	4, 836, 1083, 1622
BmgT120I	GGNCC	4 cut(s)	4, 836, 1083, 1622
BmiI	GGNNCC	2 cut(s)	306, 1173
BmrFI	CCNGG	1 cut(s)	834
BmsI	GCATC	8 cut(s)	346, 589, 934, 1399, 1729, 1826, 2554, 2662
BmtI	GCTAGC	2 cut(s)	1959, 2519
BoxI	GACNNNNGTC	1 cut(s)	586
BpiI	GAAGAC	3 cut(s)	50, 1794, 2152
BpmI	CTGGAG	1 cut(s)	2234
Bpu10I	CCTNAGC	2 cut(s)	2520, 2741
Bpu14I	TTCGAA	1 cut(s)	1547
BpuEI	CTTGAG	4 cut(s)	701, 713, 1627, 2258
BsaBI	GATNNNNATC	1 cut(s)	2568
BsaJI	CCNNGG	4 cut(s)	1590, 2380, 2411, 2793
BsaWI	WCCGGW	3 cut(s)	232, 1406, 2318
BsaXI	ACNNNNNCTCC	6 cut(s)	267, 297, 795, 825, 1817, 1847
Bsc4I	CCNNNNNNNGG	4 cut(s)	706, 1239, 1385, 2794
Bse118I	RCCGGY	1 cut(s)	1406
Bse1I	ACTGG	2 cut(s)	633, 1424
Bse3DI	GCAATG	1 cut(s)	1530
Bse8I	GATNNNNATC	1 cut(s)	2568
BseAI	TCCGGA	1 cut(s)	2318
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	4 cut(s)	1590, 2380, 2411, 2793
BseGI	GGATG	4 cut(s)	1333, 2327, 2370, 2569
BseJI	GATNNNNATC	1 cut(s)	2568
BseLI	CCNNNNNNNGG	4 cut(s)	706, 1239, 1385, 2794
BseMI	GCAATG	1 cut(s)	1530
BseMII	CTCAG	7 cut(s)	114, 885, 1028, 1113, 1142, 2256, 2511
BseNI	ACTGG	2 cut(s)	633, 1424
BseRI	GAGGAG	1 cut(s)	722
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	7 cut(s)	388, 391, 721, 816, 1734, 2471, 2742
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	1656, 1916
BshFI	GGCC	3 cut(s)	1464, 1648, 1783
BshNI	GGYRCC	1 cut(s)	1171
BshTI	ACCGGT	1 cut(s)	1406
BsiHKAI	GWGCWC	1 cut(s)	1252
BsiSI	CCGG	5 cut(s)	233, 1407, 1784, 2319, 2645
BslI	CCNNNNNNNGG	4 cut(s)	706, 1239, 1385, 2794
BsmAI	GTCTC	9 cut(s)	482, 594, 796, 995, 1118, 1645, 2267, 2541, 2546
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	1464, 1648, 1783
Bsp119I	TTCGAA	1 cut(s)	1547
Bsp1286I	GDGCHC	3 cut(s)	544, 616, 1252
Bsp13I	TCCGGA	1 cut(s)	2318
BspACI	CCGC	4 cut(s)	193, 826, 1823, 2573
BspANI	GGCC	3 cut(s)	1464, 1648, 1783
BspCNI	CTCAG	7 cut(s)	115, 886, 1029, 1114, 1141, 2257, 2512
BspEI	TCCGGA	1 cut(s)	2318
BspLI	GGNNCC	2 cut(s)	306, 1173
BspMAI	CTGCAG	3 cut(s)	739, 1965, 2461
BspMI	ACCTGC	1 cut(s)	242
BspOI	GCTAGC	2 cut(s)	1959, 2519
BspPI	GGATC	5 cut(s)	203, 691, 894, 1658, 2564
BspQI	GCTCTTC	1 cut(s)	2500
BspT104I	TTCGAA	1 cut(s)	1547
BspT107I	GGYRCC	1 cut(s)	1171
BsrDI	GCAATG	1 cut(s)	1530
BsrFI	RCCGGY	1 cut(s)	1406
BsrI	ACTGG	2 cut(s)	633, 1424
BssAI	RCCGGY	1 cut(s)	1406
BssECI	CCNNGG	4 cut(s)	1590, 2380, 2411, 2793
BssSI	CACGAG	1 cut(s)	992
BssT1I	CCWWGG	4 cut(s)	1590, 2380, 2411, 2793
Bst2BI	CACGAG	1 cut(s)	992
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	5 cut(s)	199, 725, 1445, 2134, 2210
Bst6I	CTCTTC	4 cut(s)	90, 468, 854, 2500
BstAPI	GCANNNNNTGC	2 cut(s)	944, 2465
BstBI	TTCGAA	1 cut(s)	1547
BstC8I	GCNNGC	5 cut(s)	374, 1957, 1961, 2352, 2517
BstDEI	CTNAG	9 cut(s)	123, 659, 894, 1037, 1122, 1128, 2265, 2520, 2741
BstF5I	GGATG	4 cut(s)	1333, 2327, 2370, 2569
BstH2I	RGCGCY	2 cut(s)	2494, 2778
BstHHI	GCGC	3 cut(s)	2493, 2687, 2777
BstMAI	GTCTC	9 cut(s)	482, 594, 796, 995, 1118, 1645, 2267, 2541, 2546
BstMWI	GCNNNNNNNGC	9 cut(s)	548, 620, 826, 944, 1138, 2465, 2650, 2746, 2755
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	4 cut(s)	227, 376, 679, 2235
BstPAI	GACNNNNGTC	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	832
BstSFI	CTRYAG	5 cut(s)	246, 735, 1668, 1961, 2457
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	7 cut(s)	388, 391, 721, 816, 1734, 2471, 2742
BstV2I	GAAGAC	3 cut(s)	50, 1794, 2152
BstX2I	RGATCY	4 cut(s)	208, 696, 2113, 2569
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	4 cut(s)	208, 696, 2113, 2569
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	1464, 1648, 1783
BtgZI	GCGATG	1 cut(s)	2568
BtsCI	GGATG	4 cut(s)	1333, 2327, 2370, 2569
BtsI	GCAGTG	2 cut(s)	1222, 2454
BtsIMutI	CAGTG	7 cut(s)	195, 616, 1222, 1450, 1713, 2399, 2454
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	5 cut(s)	374, 1957, 1961, 2352, 2517
CaiI	CAGNNNCTG	1 cut(s)	1661
CfoI	GCGC	3 cut(s)	2493, 2687, 2777
Cfr10I	RCCGGY	1 cut(s)	1406
Cfr13I	GGNCC	4 cut(s)	4, 836, 1083, 1622
Csp6I	GTAC	4 cut(s)	101, 1172, 1421, 2636
CspAI	ACCGGT	1 cut(s)	1406
CspCI	CAANNNNNGTGG	3 cut(s)	31, 1866, 1901
CviAII	CATG	9 cut(s)	224, 373, 419, 676, 952, 1176, 1750, 2232, 2285
CviQI	GTAC	4 cut(s)	101, 1172, 1421, 2636
DdeI	CTNAG	9 cut(s)	123, 659, 894, 1037, 1122, 1128, 2265, 2520, 2741
DraI	TTTAAA	3 cut(s)	288, 1276, 1518
DrdI	GACNNNNNNGTC	1 cut(s)	1293
DseDI	GACNNNNNNGTC	1 cut(s)	1293
EaeI	YGGCCR	1 cut(s)	1781
Eam1104I	CTCTTC	4 cut(s)	90, 468, 854, 2500
EarI	CTCTTC	4 cut(s)	90, 468, 854, 2500
Eco130I	CCWWGG	4 cut(s)	1590, 2380, 2411, 2793
Eco147I	AGGCCT	1 cut(s)	1648
Eco24I	GRGCYC	1 cut(s)	544
Eco47I	GGWCC	4 cut(s)	4, 836, 1083, 1622
Eco57I	CTGAAG	6 cut(s)	21, 162, 1490, 1689, 1988, 2228
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRI	GAATTC	2 cut(s)	605, 1489
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	4 cut(s)	1590, 2380, 2411, 2793
EcoT22I	ATGCAT	2 cut(s)	361, 374
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	4 cut(s)	1590, 2380, 2411, 2793
FaeI	CATG	9 cut(s)	227, 376, 422, 679, 955, 1179, 1753, 2235, 2288
FatI	CATG	9 cut(s)	223, 372, 418, 675, 951, 1175, 1749, 2231, 2284
FauNDI	CATATG	1 cut(s)	2640
FbaI	TGATCA	1 cut(s)	2506
FblI	GTMKAC	1 cut(s)	2079
Fnu4HI	GCNGC	8 cut(s)	377, 380, 735, 827, 830, 1723, 2460, 2756
FokI	GGATG	4 cut(s)	1340, 2334, 2357, 2576
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	8 cut(s)	377, 380, 735, 827, 830, 1723, 2460, 2756
FspBI	CTAG	7 cut(s)	188, 624, 1245, 1956, 2381, 2516, 2657
GlaI	GCGC	3 cut(s)	2492, 2686, 2776
GluI	GCNGC	8 cut(s)	377, 380, 735, 827, 830, 1723, 2460, 2756
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	2234
HaeII	RGCGCY	2 cut(s)	2494, 2778
HaeIII	GGCC	3 cut(s)	1464, 1648, 1783
HapII	CCGG	5 cut(s)	233, 1407, 1784, 2319, 2645
HhaI	GCGC	3 cut(s)	2493, 2687, 2777
Hin1II	CATG	9 cut(s)	227, 376, 422, 679, 955, 1179, 1753, 2235, 2288
Hin6I	GCGC	3 cut(s)	2491, 2685, 2775
HinP1I	GCGC	3 cut(s)	2491, 2685, 2775
HpaII	CCGG	5 cut(s)	233, 1407, 1784, 2319, 2645
HphI	GGTGA	5 cut(s)	266, 275, 862, 2083, 2356
Hpy166II	GTNNAC	5 cut(s)	497, 1298, 1373, 2080, 2619
Hpy8I	GTNNAC	5 cut(s)	497, 1298, 1373, 2080, 2619
Hpy99I	CGWCG	2 cut(s)	729, 1797
HpyAV	CCTTC	9 cut(s)	262, 448, 554, 679, 876, 1804, 2263, 2325, 2642
HpyCH4III	ACNGT	5 cut(s)	199, 725, 1445, 2134, 2210
HpyCH4IV	ACGT	2 cut(s)	1729, 2425
HpyF10VI	GCNNNNNNNGC	9 cut(s)	548, 620, 826, 944, 1138, 2465, 2650, 2746, 2755
HpyF3I	CTNAG	9 cut(s)	123, 659, 894, 1037, 1122, 1128, 2265, 2520, 2741
HpySE526I	ACGT	2 cut(s)	1729, 2425
Hsp92II	CATG	9 cut(s)	227, 376, 422, 679, 955, 1179, 1753, 2235, 2288
HspAI	GCGC	3 cut(s)	2491, 2685, 2775
Kpn2I	TCCGGA	1 cut(s)	2318
KpnI	GGTACC	1 cut(s)	1175
Ksp22I	TGATCA	1 cut(s)	2506
LguI	GCTCTTC	1 cut(s)	2500
LmnI	GCTCC	7 cut(s)	406, 1165, 1414, 1531, 1685, 1825, 2253
Lsp1109I	GCAGC	7 cut(s)	388, 391, 721, 816, 1734, 2471, 2742
LweI	GCATC	8 cut(s)	346, 589, 934, 1399, 1729, 1826, 2554, 2662
MaeI	CTAG	7 cut(s)	188, 624, 1245, 1956, 2381, 2516, 2657
MaeII	ACGT	2 cut(s)	1729, 2425
MaeIII	GTNAC	4 cut(s)	1113, 1595, 2603, 2678
MfeI	CAATTG	1 cut(s)	1883
MflI	RGATCY	4 cut(s)	208, 696, 2113, 2569
MhlI	GDGCHC	3 cut(s)	544, 616, 1252
MlyI	GAGTC	6 cut(s)	287, 997, 1120, 2059, 2269, 2704
MmeI	TCCRAC	3 cut(s)	1245, 1464, 1509
Mph1103I	ATGCAT	2 cut(s)	361, 374
MroI	TCCGGA	1 cut(s)	2318
MroXI	GAANNNNTTC	1 cut(s)	1102
MseI	TTAA	8 cut(s)	287, 1049, 1275, 1290, 1322, 1517, 2033, 2106
MslI	CAYNNNNRTG	3 cut(s)	351, 1303, 1706
MspA1I	CMGCKG	2 cut(s)	122, 734
MspI	CCGG	5 cut(s)	233, 1407, 1784, 2319, 2645
MspR9I	CCNGG	1 cut(s)	834
MunI	CAATTG	1 cut(s)	1883
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	9 cut(s)	548, 620, 826, 944, 1138, 2465, 2650, 2746, 2755
NdeI	CATATG	1 cut(s)	2640
NheI	GCTAGC	2 cut(s)	1955, 2515
NlaIII	CATG	9 cut(s)	227, 376, 422, 679, 955, 1179, 1753, 2235, 2288
NlaIV	GGNNCC	2 cut(s)	306, 1173
NmeAIII	GCCGAG	1 cut(s)	2736
NmuCI	GTSAC	2 cut(s)	1113, 2603
NsiI	ATGCAT	2 cut(s)	361, 374
NspI	RCATGY	4 cut(s)	227, 376, 679, 2235
NspV	TTCGAA	1 cut(s)	1547
OliI	CACNNNNGTG	1 cut(s)	1706
PaeI	GCATGC	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	1648
PciI	ACATGT	1 cut(s)	2231
PciSI	GCTCTTC	1 cut(s)	2500
PctI	GAATGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	1102
PfeI	GAWTC	9 cut(s)	632, 740, 916, 1235, 1475, 1658, 1673, 2009, 2060
PflMI	CCANNNNNTGG	1 cut(s)	2794
PinAI	ACCGGT	1 cut(s)	1406
PkrI	GCNGC	8 cut(s)	378, 381, 736, 828, 831, 1724, 2461, 2757
PleI	GAGTC	6 cut(s)	286, 996, 1120, 2058, 2269, 2703
PpsI	GAGTC	6 cut(s)	286, 996, 1120, 2058, 2269, 2703
PpuMI	RGGWCCY	1 cut(s)	836
PscI	ACATGT	1 cut(s)	2231
PshAI	GACNNNNGTC	1 cut(s)	586
PshBI	ATTAAT	1 cut(s)	2106
Psp1406I	AACGTT	2 cut(s)	1729, 2425
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	2 cut(s)	306, 1173
PspPI	GGNCC	4 cut(s)	4, 836, 1083, 1622
PspPPI	RGGWCCY	1 cut(s)	836
PstI	CTGCAG	3 cut(s)	739, 1965, 2461
PstNI	CAGNNNCTG	1 cut(s)	1661
PsuI	RGATCY	4 cut(s)	208, 696, 2113, 2569
PvuII	CAGCTG	2 cut(s)	122, 734
RsaI	GTAC	4 cut(s)	102, 1173, 1422, 2637
RsaNI	GTAC	4 cut(s)	101, 1172, 1421, 2636
RseI	CAYNNNNRTG	3 cut(s)	351, 1303, 1706
SapI	GCTCTTC	1 cut(s)	2500
SaqAI	TTAA	8 cut(s)	287, 1049, 1275, 1290, 1322, 1517, 2033, 2106
SatI	GCNGC	8 cut(s)	377, 380, 735, 827, 830, 1723, 2460, 2756
Sau96I	GGNCC	4 cut(s)	4, 836, 1083, 1622
SchI	GAGTC	6 cut(s)	287, 997, 1120, 2059, 2269, 2704
ScrFI	CCNGG	1 cut(s)	834
SduI	GDGCHC	3 cut(s)	544, 616, 1252
SfaNI	GCATC	8 cut(s)	346, 589, 934, 1399, 1729, 1826, 2554, 2662
SfcI	CTRYAG	5 cut(s)	246, 735, 1668, 1961, 2457
SfuI	TTCGAA	1 cut(s)	1547
SinI	GGWCC	4 cut(s)	4, 836, 1083, 1622
SmiMI	CAYNNNNRTG	3 cut(s)	351, 1303, 1706
SmlI	CTYRAG	4 cut(s)	680, 692, 1642, 2237
SmoI	CTYRAG	4 cut(s)	680, 692, 1642, 2237
SphI	GCATGC	1 cut(s)	376
SseBI	AGGCCT	1 cut(s)	1648
SsiI	CCGC	4 cut(s)	193, 826, 1823, 2573
SspMI	CTAG	7 cut(s)	188, 624, 1245, 1956, 2381, 2516, 2657
StuI	AGGCCT	1 cut(s)	1648
StyD4I	CCNGG	1 cut(s)	832
StyI	CCWWGG	4 cut(s)	1590, 2380, 2411, 2793
TaaI	ACNGT	5 cut(s)	199, 725, 1445, 2134, 2210
TaiI	ACGT	2 cut(s)	1732, 2428
TaqI	TCGA	9 cut(s)	149, 394, 547, 567, 1096, 1192, 1547, 2088, 2102
TaqII	GACCGA	2 cut(s)	717, 1806
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	9 cut(s)	632, 740, 916, 1235, 1475, 1658, 1673, 2009, 2060
Tru1I	TTAA	8 cut(s)	287, 1049, 1275, 1290, 1322, 1517, 2033, 2106
Tru9I	TTAA	8 cut(s)	287, 1049, 1275, 1290, 1322, 1517, 2033, 2106
TscAI	CASTG	7 cut(s)	202, 616, 1222, 1450, 1713, 2406, 2461
TseFI	GTSAC	2 cut(s)	1113, 2603
TseI	GCWGC	7 cut(s)	376, 379, 734, 829, 1722, 2459, 2755
Tsp45I	GTSAC	2 cut(s)	1113, 2603
TspDTI	ATGAA	9 cut(s)	102, 348, 435, 681, 797, 872, 1950, 1998, 2124
TspGWI	ACGGA	1 cut(s)	2576
TspRI	CASTG	7 cut(s)	202, 616, 1222, 1450, 1713, 2406, 2461
Van91I	CCANNNNNTGG	1 cut(s)	2794
VpaK11BI	GGWCC	4 cut(s)	4, 836, 1083, 1622
VspI	ATTAAT	1 cut(s)	2106
XapI	RAATTY	7 cut(s)	605, 668, 958, 969, 1044, 1148, 1489
XceI	RCATGY	4 cut(s)	227, 376, 679, 2235
XmaJI	CCTAGG	1 cut(s)	2380
XmiI	GTMKAC	1 cut(s)	2079
XmnI	GAANNNNTTC	1 cut(s)	1102
XspI	CTAG	7 cut(s)	188, 624, 1245, 1956, 2381, 2516, 2657
Zsp2I	ATGCAT	2 cut(s)	361, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.