Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004602

Physical Location & Seq

Genomic Coordinates Reverse (-)

59430070 .. 59434624

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGTGGTCACTGATTGGTATAGATATGCAATATTTGGGTATATGGTACAATTTCGTGTTAGCTGAAATCATGGACCACAAGGGTTGGCTTTGGAGGAAAAAGTCTTCAGAGAAGATAATTGTTTCAACTAACAGACTTGCCATTCCTTTAGGAACAATTGAAGAAGAGGTACAAACAAACCCGCCTGAGAAAGGAAATGATGTAGAGAGACCTGGTAAAAATCTAAATGAGAAGTTAGCTTCAGTCCTTCTGGACTCTAATGTTAAAGAAGAAGGCATACCAGGAGATTTGGTACCAAAGCAAGAACTAGATGAAGCTTTGAGGCAGGGAATAGCTGCAAACGAAAGATCGATTCATTCGGATGATGCATTGAAAGAATGCATGGAACAATTAATTCTTGTTCGGGAAGAGCAGGAGAAAAGAATACATGATGCTGTTATGATGACATCGAGAGAGTATGAGAAATCTCAGAAAAAATTAGAAGCTAAGTTGCGAGAGACAAGTGAACAGGTTACAAACTTAGCTGTTGAAAATACGAATCTGACCAGGGCCCTTCGAGCAAAAGAGAAGTTGATGGAAGATTTACGTAGACAGAAGTCTCAAACAGATGCAGAATTTAGTGCACTAATGGCTAGACTGGATTGCACAGAAAAAGAAAATGCCTTCTTAAGATATGAATTTCACATGCTCGAGAAGGAACTCGAGATTCGTAGCGAGGAGATGGAGTACAACCGTCAGTCTGCTGAAGAATTGCACAAACAGCACTTGGAGAGTATGATGAGAATCACAGAGTTAGAACAAGAATGTCAAAGACTTCATCTTCTTCTGCGAAAACGGCTGCCAGGTCCTGTTTCGATGACTATGAAGAATGAAGCTAAAATGATGGGGAGGGATCAGACAGAGATGAGAAGAAGGAAGCTTAATCCTACTAGAGATATGATCGTAAGAGATGCCAACATGGGAAACTCTCCTGAAATACCAAATAAGAATATGAGTTTCATGATTGAGCAGTTACGTAACATGGAAGAAGAAAACAAAGTTCTTAGAGATATTTTAACCAGGAAAAACTCTGAGCTCCTTTCTTCGAGGAACATGCATTCTCAAATAGCTTCCAGATTGTCTCAAGCTGAGAAATCTATGGAGCTGGCACAATGTAGTCCTATCCCAAATGATGTTTCTCGATCTTCAAGGTATGACATTTGCAGTGATGATGGAATGAGTTCCTCCGAATCTTGGGCTGGTGCATTACTCTCAGAGTTGGAACATTTTAGAAGTGGGAGGCTTAAAAGTCCAAAGCAGCACAAAGAAATGGAGGTTTCAGACATGAGCTTAATGGATGATTTTGTTGAGATGGAGAAATTGGCAATAGTTTCTGCAAATACACCTCCTAAAAATGCTCATAATCTTCGTTTTAATGGTCAGGACCTGGTACGAGTTGAAGTTCAATCTAGCGACAGTGACATAAGAAAGTACGGCGAGTCCAGAGATGTAGTACCTGAGAGTTCTTTTGATTGGCTTCAGGTTGTTTTAAAAGCAATGTTGGAGCAAAAGAATGTTTCAAAACGAAGTCTAGATGAGCTATTTGAGGACATTAAAATTGCTTTTGGTTACCTAAATCAGCCAACTAAGCATGAGGCTAGTAAAACCGCAGAATATCAAGAGGAGTCACTGTGTCTTGCTCTAGTTGCTTCCTCAAATGAAAACAAGGTTGGTGATAAATTGCAAGAAGAAAACAGCAGATTAAAAACTGAACTGAAGAATATGGAATCTGCAAAGAAAGAAATGGAAGCTAGGCTACAGTCAGAAACTGAAAAGAATGAAGCGTTGATGGTACAACTTCAGGAATCACAGCAAAGCCTTGGAACCTTACAAACAGAACTGGAGAGTCTGAGAGAAGCGGAGAGGATGATAGAAGACCAGCTCGAAAATCAGAAGTCGATTAATGAAGATCTCGATACCCAGCTGACTATTGCCAAAGCAAAGTTAAATGAAGTCTTTCAGAAGTTCTCGTCTTTAGAAGTGGAATTGGAGGATAAACATAACTGTTTTGAAGAATTAGAAGCAACATGTCTTGAGCTCCAACTCCAGCAAGAAAGTGCTGCAAAGACGGAAACTCCAGAGTATGGCATAAGCAAAGAGGAAAAACAGTCCCAACCTGGATGGGAAATCACAACAGCTTCAGTGAAGTTGGCAGAGTGCCAAGAAACCATCCTAAACTTGGGAAAACAGCTGAAGGCACTAGCTACACCAAGAGAAGCAGCACTGTTTGACAAGGTGTTCTCGACCACCAGCGCTGCAGCCAACACCAAGCGCTCTTCCCTACGTGATCGAATGCTAGCTGATGAAGATCCCAGAGCAGAGGTTCTGAAGTCTCCAAAAGATAAACAAGCAATGAGGGATGCAGATGCACAGAAACCATCCCTTCTGCACTCTGATAGTCATAACGCATTGTCCACTCCTAGTGCTCTGGTAAATACGCGGCAAGGTCATTTTGGTTCAAAGCATCTGGCTATTGTGCCGAGTAAGAAACAGGGAGGTTTTGGTTTTCTAAGGAGGCTACTGCTGAGGAGGAAGAAAGGAAGCAGCAAGAAACCCCAAACCTTGGCCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

FPP

Protein Analysis

871

Amino Acids

99.59

Weight (kDa)

5.61

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	100 - 552	4.4e-143	Filament-like plant protein, long coiled-coil
FPP	PF05911	544 - 754	4.5e-54	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19370 AT3G19370 AT3G19370
fragaria_vesca	FvH4_2g05731 FvH4_2g05731 FvH4_2g05731 FvH4_2g05731
malus_domestica	MD05G1084800.v1.1
prunus_persica	Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1
pyrus_communis	pycom05g08380
rosa_chinensis	RchiOBHm_Chr6g0256631
rosa_laevigata	RLG00000014748
rosa_multiflora	Rmu_co8155852.1_g000001 Rmu_sc0007004.1_g000002 Rmu_sc0034019.1_g000001 Rmu_sc0034020.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042850 Rroxscaffold_7G00209150
rosa_rugosa	Rorug05G0565100 Rorug05G0565200 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh6AG083000 Rh6BG077600 Rh6CG072200 Rh6DG069400
rosa_wichuraiana	Rw6G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AccB7I	CCANNNNNTGG	2 cut(s)	2123, 2602
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	2479
AciI	CCGC	4 cut(s)	182, 1647, 1898, 2479
AclWI	GGATC	2 cut(s)	900, 2342
AcoI	YGGCCR	1 cut(s)	2604
AcsI	RAATTY	2 cut(s)	614, 677
AcuI	CTGAAG	9 cut(s)	90, 225, 765, 1502, 1775, 1823, 2163, 2252, 2387
AfaI	GTAC	8 cut(s)	47, 171, 294, 728, 1431, 1472, 1494, 1833
AfeI	AGCGCT	2 cut(s)	2293, 2312
AfiI	CCNNNNNNNGG	5 cut(s)	191, 1233, 2123, 2218, 2602
AflII	CTTAAG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	2066
AjnI	CCWGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
AjuI	GAANNNNNNNTTGG	4 cut(s)	1159, 1191, 1692, 1724
Alw21I	GWGCWC	4 cut(s)	625, 1077, 2079, 2467
Alw26I	GTCTC	5 cut(s)	202, 491, 603, 1125, 2376
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	900, 2342
AlwNI	CAGNNNCTG	3 cut(s)	848, 1426, 1808
Ama87I	CYCGRG	2 cut(s)	689, 701
Aor51HI	AGCGCT	2 cut(s)	2293, 2312
AoxI	GGCC	2 cut(s)	549, 2604
ApaI	GGGCCC	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	8 cut(s)	335, 838, 1297, 2099, 2258, 2294, 2297, 2583
ApoI	RAATTY	2 cut(s)	614, 677
AseI	ATTAAT	2 cut(s)	392, 1941
Asp700I	GAANNNNTTC	2 cut(s)	1219, 1995
Asp718I	GGTACC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	2294, 2313
AspS9I	GGNCC	5 cut(s)	73, 549, 550, 845, 1423
AsuHPI	GGTGA	1 cut(s)	1724
AsuNHI	GCTAGC	1 cut(s)	2335
AvaI	CYCGRG	2 cut(s)	689, 701
AvaII	GGWCC	3 cut(s)	73, 845, 1423
BaeGI	GKGCMC	2 cut(s)	553, 625
BalI	TGGCCA	1 cut(s)	2606
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	3 cut(s)	553, 1077, 2079
BarI	GAAGNNNNNNTAC	6 cut(s)	153, 185, 261, 293, 1779, 1811
BbsI	GAAGAC	2 cut(s)	96, 1920
Bbv12I	GWGCWC	4 cut(s)	625, 1077, 2079, 2467
BbvCI	CCTCAGC	1 cut(s)	2564
BbvI	GCAGC	8 cut(s)	322, 825, 1309, 2086, 2270, 2281, 2309, 2595
BccI	CCATC	9 cut(s)	568, 715, 877, 1205, 1345, 1822, 2154, 2216, 2425
BceAI	ACGGC	2 cut(s)	851, 1489
BcgI	CGANNNNNNTGC	2 cut(s)	1075, 1109
BciT130I	CCWGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
BcoDI	GTCTC	5 cut(s)	202, 491, 603, 1125, 2376
BfmI	CTRYAG	2 cut(s)	1796, 2295
BfoI	RGCGCY	2 cut(s)	2295, 2314
BfrI	CTTAAG	1 cut(s)	667
BglII	AGATCT	1 cut(s)	1948
BisI	GCNGC	9 cut(s)	336, 839, 1298, 2100, 2259, 2295, 2298, 2480, 2584
BlsI	GCNGC	9 cut(s)	337, 840, 1299, 2101, 2260, 2296, 2299, 2481, 2585
Bme1390I	CCNGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
Bme18I	GGWCC	3 cut(s)	73, 845, 1423
BmeT110I	CYCGRG	2 cut(s)	689, 701
BmgT120I	GGNCC	5 cut(s)	73, 549, 550, 845, 1423
BmiI	GGNNCC	3 cut(s)	294, 551, 1864
BmrFI	CCNGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
BmsI	GCATC	7 cut(s)	355, 421, 598, 940, 2389, 2395, 2512
BmtI	GCTAGC	1 cut(s)	2339
BoxI	GACNNNNGTC	1 cut(s)	595
BpiI	GAAGAC	2 cut(s)	96, 1920
BpmI	CTGGAG	3 cut(s)	1901, 2069, 2100
Bpu10I	CCTNAGC	1 cut(s)	2564
BpuEI	CTTGAG	2 cut(s)	1107, 2093
Bsa29I	ATCGAT	1 cut(s)	350
BsaAI	YACGTR	3 cut(s)	587, 1016, 2324
BsaBI	GATNNNNATC	2 cut(s)	782, 2346
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	546, 1858, 2601
BsaXI	ACNNNNNCTCC	8 cut(s)	276, 306, 710, 740, 1655, 1685, 2098, 2128
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 1233, 2123, 2218, 2602
Bse1I	ACTGG	2 cut(s)	642, 1884
Bse3DI	GCAATG	2 cut(s)	1542, 2397
Bse8I	GATNNNNATC	2 cut(s)	782, 2346
BseBI	CCWGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	546, 1858, 2601
BseGI	GGATG	7 cut(s)	367, 1342, 1911, 2165, 2208, 2404, 2417
BseJI	GATNNNNATC	2 cut(s)	782, 2346
BseLI	CCNNNNNNNGG	5 cut(s)	191, 1233, 2123, 2218, 2602
BseMI	GCAATG	2 cut(s)	1542, 2397
BseMII	CTCAG	8 cut(s)	177, 482, 1062, 1119, 1266, 1488, 1880, 2555
BseNI	ACTGG	2 cut(s)	642, 1884
BseRI	GAGGAG	3 cut(s)	731, 1676, 2581
BseSI	GKGCMC	2 cut(s)	553, 625
BseXI	GCAGC	8 cut(s)	322, 825, 1309, 2086, 2270, 2281, 2309, 2595
BseYI	CCCAGC	1 cut(s)	1959
BsgI	GTGCAG	1 cut(s)	2411
Bsh1236I	CGCG	1 cut(s)	2479
BshFI	GGCC	2 cut(s)	551, 2606
BshNI	GGYRCC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	350
BsiHKAI	GWGCWC	4 cut(s)	625, 1077, 2079, 2467
BsiHKCI	CYCGRG	2 cut(s)	689, 701
BslFI	GGGAC	1 cut(s)	2134
BslI	CCNNNNNNNGG	5 cut(s)	191, 1233, 2123, 2218, 2602
BsmAI	GTCTC	5 cut(s)	202, 491, 603, 1125, 2376
BsmFI	GGGAC	1 cut(s)	2134
BsmI	GAATGC	3 cut(s)	383, 1096, 2337
BsnI	GGCC	2 cut(s)	551, 2606
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	2 cut(s)	689, 701
Bsp120I	GGGCCC	1 cut(s)	549
Bsp1286I	GDGCHC	5 cut(s)	553, 625, 1077, 2079, 2467
Bsp143I	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
BspACI	CCGC	4 cut(s)	182, 1647, 1898, 2479
BspANI	GGCC	2 cut(s)	551, 2606
BspCNI	CTCAG	8 cut(s)	178, 481, 1063, 1120, 1265, 1489, 1881, 2556
BspDI	ATCGAT	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	2479
BspHI	TCATGA	1 cut(s)	999
BspLI	GGNNCC	3 cut(s)	294, 551, 1864
BspMAI	CTGCAG	1 cut(s)	2299
BspOI	GCTAGC	1 cut(s)	2339
BspPI	GGATC	2 cut(s)	900, 2342
BspQI	GCTCTTC	2 cut(s)	402, 2320
BspT107I	GGYRCC	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	1542, 2397
BsrI	ACTGG	2 cut(s)	642, 1884
BssECI	CCNNGG	3 cut(s)	546, 1858, 2601
BssMI	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
BssT1I	CCWWGG	2 cut(s)	1858, 2601
Bst2UI	CCWGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
Bst4CI	ACNGT	7 cut(s)	734, 1457, 1671, 1800, 2045, 2148, 2265
Bst6I	CTCTTC	3 cut(s)	159, 402, 2320
BstAFI	CTTAAG	1 cut(s)	667
BstBAI	YACGTR	3 cut(s)	587, 1016, 2324
BstC8I	GCNNGC	2 cut(s)	1146, 2337
BstEII	GGTNACC	1 cut(s)	1607
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	7 cut(s)	367, 1342, 1911, 2165, 2208, 2404, 2417
BstFNI	CGCG	1 cut(s)	2479
BstH2I	RGCGCY	2 cut(s)	2295, 2314
BstHHI	GCGC	2 cut(s)	2294, 2313
BstKTI	GATC	7 cut(s)	350, 895, 942, 1184, 1951, 2329, 2350
BstMAI	GTCTC	5 cut(s)	202, 491, 603, 1125, 2376
BstMBI	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
BstMWI	GCNNNNNNNGC	6 cut(s)	557, 629, 760, 835, 1627, 1685
BstNI	CCWGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
BstNSI	RCATGY	3 cut(s)	688, 1096, 2070
BstPAI	GACNNNNGTC	1 cut(s)	595
BstPI	GGTNACC	1 cut(s)	1607
BstSCI	CCNGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
BstSFI	CTRYAG	2 cut(s)	1796, 2295
BstSLI	GKGCMC	2 cut(s)	553, 625
BstSNI	TACGTA	2 cut(s)	587, 1016
BstUI	CGCG	1 cut(s)	2479
BstV1I	GCAGC	8 cut(s)	322, 825, 1309, 2086, 2270, 2281, 2309, 2595
BstV2I	GAAGAC	2 cut(s)	96, 1920
BstX2I	RGATCY	2 cut(s)	1948, 2347
BstYI	RGATCY	2 cut(s)	1948, 2347
Bsu15I	ATCGAT	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	551, 2606
BsuTUI	ATCGAT	1 cut(s)	350
BtsCI	GGATG	7 cut(s)	367, 1342, 1911, 2165, 2208, 2404, 2417
BtsI	GCAGTG	1 cut(s)	1210
BtsIMutI	CAGTG	6 cut(s)	8, 1210, 1462, 1667, 2187, 2261
Cac8I	GCNNGC	2 cut(s)	1146, 2337
CaiI	CAGNNNCTG	3 cut(s)	848, 1426, 1808
CciI	TCATGA	1 cut(s)	999
CfoI	GCGC	2 cut(s)	2294, 2313
Cfr13I	GGNCC	5 cut(s)	73, 549, 550, 845, 1423
ClaI	ATCGAT	1 cut(s)	350
CsiI	ACCWGGT	2 cut(s)	211, 1425
Csp6I	GTAC	8 cut(s)	46, 170, 293, 727, 1430, 1471, 1493, 1832
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviQI	GTAC	8 cut(s)	46, 170, 293, 727, 1430, 1471, 1493, 1832
DpnI	GATC	7 cut(s)	349, 894, 941, 1183, 1950, 2328, 2349
DpnII	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
DraI	TTTAAA	1 cut(s)	1530
EaeI	YGGCCR	1 cut(s)	2604
Eam1104I	CTCTTC	3 cut(s)	159, 402, 2320
EarI	CTCTTC	3 cut(s)	159, 402, 2320
Ecl136II	GAGCTC	2 cut(s)	1075, 2077
Eco105I	TACGTA	2 cut(s)	587, 1016
Eco130I	CCWWGG	2 cut(s)	1858, 2601
Eco24I	GRGCYC	3 cut(s)	553, 1077, 2079
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	3 cut(s)	73, 845, 1423
Eco47III	AGCGCT	2 cut(s)	2293, 2312
Eco53kI	GAGCTC	2 cut(s)	1075, 2077
Eco57I	CTGAAG	9 cut(s)	90, 225, 765, 1502, 1775, 1823, 2163, 2252, 2387
Eco88I	CYCGRG	2 cut(s)	689, 701
Eco91I	GGTNACC	1 cut(s)	1607
EcoICRI	GAGCTC	2 cut(s)	1075, 2077
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	4 cut(s)	549, 550, 845, 1423
EcoO65I	GGTNACC	1 cut(s)	1607
EcoRII	CCWGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
EcoT14I	CCWWGG	2 cut(s)	1858, 2601
EcoT22I	ATGCAT	3 cut(s)	370, 383, 1098
EcoT38I	GRGCYC	3 cut(s)	553, 1077, 2079
ErhI	CCWWGG	2 cut(s)	1858, 2601
FaqI	GGGAC	1 cut(s)	2134
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	9 cut(s)	336, 839, 1298, 2100, 2259, 2295, 2298, 2480, 2584
FokI	GGATG	7 cut(s)	374, 1349, 1918, 2172, 2195, 2404, 2411
FriOI	GRGCYC	3 cut(s)	553, 1077, 2079
Fsp4HI	GCNGC	9 cut(s)	336, 839, 1298, 2100, 2259, 2295, 2298, 2480, 2584
GlaI	GCGC	2 cut(s)	2293, 2312
GluI	GCNGC	9 cut(s)	336, 839, 1298, 2100, 2259, 2295, 2298, 2480, 2584
GsaI	CCCAGC	1 cut(s)	1963
GsuI	CTGGAG	3 cut(s)	1901, 2069, 2100
HaeII	RGCGCY	2 cut(s)	2295, 2314
HaeIII	GGCC	2 cut(s)	551, 2606
HhaI	GCGC	2 cut(s)	2294, 2313
Hin6I	GCGC	2 cut(s)	2292, 2311
HinP1I	GCGC	2 cut(s)	2292, 2311
HindIII	AAGCTT	3 cut(s)	315, 917, 2610
HphI	GGTGA	1 cut(s)	1724
Hpy166II	GTNNAC	4 cut(s)	506, 590, 623, 2454
Hpy8I	GTNNAC	4 cut(s)	506, 590, 623, 2454
HpyAV	CCTTC	8 cut(s)	257, 266, 563, 673, 688, 906, 2227, 2432
HpyCH4III	ACNGT	7 cut(s)	734, 1457, 1671, 1800, 2045, 2148, 2265
HpyCH4IV	ACGT	3 cut(s)	586, 1015, 2323
HpyF10VI	GCNNNNNNNGC	6 cut(s)	557, 629, 760, 835, 1627, 1685
HpySE526I	ACGT	3 cut(s)	586, 1015, 2323
HspAI	GCGC	2 cut(s)	2292, 2311
KpnI	GGTACC	1 cut(s)	296
Kzo9I	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
LguI	GCTCTTC	2 cut(s)	402, 2320
LmnI	GCTCC	4 cut(s)	1080, 1141, 1543, 2082
Lsp1109I	GCAGC	8 cut(s)	322, 825, 1309, 2086, 2270, 2281, 2309, 2595
LweI	GCATC	7 cut(s)	355, 421, 598, 940, 2389, 2395, 2512
MabI	ACCWGGT	2 cut(s)	211, 1425
MaeII	ACGT	3 cut(s)	586, 1015, 2323
MaeIII	GTNAC	7 cut(s)	6, 511, 1011, 1016, 1457, 1607, 1665
MalI	GATC	7 cut(s)	349, 894, 941, 1183, 1950, 2328, 2349
MboI	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	2 cut(s)	1948, 2347
MhlI	GDGCHC	5 cut(s)	553, 625, 1077, 2079, 2467
MlsI	TGGCCA	1 cut(s)	2606
MluNI	TGGCCA	1 cut(s)	2606
MlyI	GAGTC	4 cut(s)	248, 1487, 1673, 1894
MmeI	TCCRAC	3 cut(s)	1239, 1521, 2104
Mox20I	TGGCCA	1 cut(s)	2606
Mph1103I	ATGCAT	3 cut(s)	370, 383, 1098
MroXI	GAANNNNTTC	2 cut(s)	1219, 1995
MscI	TGGCCA	1 cut(s)	2606
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	2606
MspA1I	CMGCKG	2 cut(s)	1963, 2230
MspCI	CTTAAG	1 cut(s)	667
MspR9I	CCNGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	3 cut(s)	383, 1096, 2337
MvaI	CCWGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
MvnI	CGCG	1 cut(s)	2479
MwoI	GCNNNNNNNGC	6 cut(s)	557, 629, 760, 835, 1627, 1685
NdeII	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
NheI	GCTAGC	1 cut(s)	2335
NlaIV	GGNNCC	3 cut(s)	294, 551, 1864
NmeAIII	GCCGAG	1 cut(s)	2544
NmuCI	GTSAC	3 cut(s)	6, 1457, 1665
NsiI	ATGCAT	3 cut(s)	370, 383, 1098
NspI	RCATGY	3 cut(s)	688, 1096, 2070
PaeR7I	CTCGAG	2 cut(s)	689, 701
PagI	TCATGA	1 cut(s)	999
PciI	ACATGT	1 cut(s)	2066
PciSI	GCTCTTC	2 cut(s)	402, 2320
PctI	GAATGC	3 cut(s)	383, 1096, 2337
PdmI	GAANNNNTTC	2 cut(s)	1219, 1995
PfeI	GAWTC	7 cut(s)	352, 538, 706, 783, 1229, 1766, 1844
PflMI	CCANNNNNTGG	2 cut(s)	2123, 2602
PkrI	GCNGC	9 cut(s)	337, 840, 1299, 2101, 2260, 2296, 2299, 2481, 2585
PleI	GAGTC	4 cut(s)	248, 1486, 1672, 1893
PpsI	GAGTC	4 cut(s)	248, 1486, 1672, 1893
Ppu21I	YACGTR	3 cut(s)	587, 1016, 2324
PpuMI	RGGWCCY	2 cut(s)	845, 1423
PscI	ACATGT	1 cut(s)	2066
PshAI	GACNNNNGTC	1 cut(s)	595
PshBI	ATTAAT	2 cut(s)	392, 1941
Psp124BI	GAGCTC	2 cut(s)	1077, 2079
Psp5II	RGGWCCY	2 cut(s)	845, 1423
Psp6I	CCWGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
PspEI	GGTNACC	1 cut(s)	1607
PspFI	CCCAGC	1 cut(s)	1959
PspGI	CCWGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
PspN4I	GGNNCC	3 cut(s)	294, 551, 1864
PspOMI	GGGCCC	1 cut(s)	549
PspPI	GGNCC	5 cut(s)	73, 549, 550, 845, 1423
PspPPI	RGGWCCY	2 cut(s)	845, 1423
PstI	CTGCAG	1 cut(s)	2299
PstNI	CAGNNNCTG	3 cut(s)	848, 1426, 1808
PsuI	RGATCY	2 cut(s)	1948, 2347
PvuII	CAGCTG	2 cut(s)	1963, 2230
RsaI	GTAC	8 cut(s)	47, 171, 294, 728, 1431, 1472, 1494, 1833
RsaNI	GTAC	8 cut(s)	46, 170, 293, 727, 1430, 1471, 1493, 1832
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	2 cut(s)	1077, 2079
SapI	GCTCTTC	2 cut(s)	402, 2320
SatI	GCNGC	9 cut(s)	336, 839, 1298, 2100, 2259, 2295, 2298, 2480, 2584
Sau3AI	GATC	7 cut(s)	347, 892, 939, 1181, 1948, 2326, 2347
Sau96I	GGNCC	5 cut(s)	73, 549, 550, 845, 1423
SchI	GAGTC	4 cut(s)	248, 1487, 1673, 1894
ScrFI	CCNGG	7 cut(s)	213, 282, 547, 843, 1060, 1427, 2157
SduI	GDGCHC	5 cut(s)	553, 625, 1077, 2079, 2467
SexAI	ACCWGGT	2 cut(s)	211, 1425
SfaNI	GCATC	7 cut(s)	355, 421, 598, 940, 2389, 2395, 2512
SfcI	CTRYAG	2 cut(s)	1796, 2295
Sfr274I	CTCGAG	2 cut(s)	689, 701
SinI	GGWCC	3 cut(s)	73, 845, 1423
SlaI	CTCGAG	2 cut(s)	689, 701
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	5 cut(s)	667, 689, 701, 1122, 2072
SmoI	CTYRAG	5 cut(s)	667, 689, 701, 1122, 2072
SnaBI	TACGTA	2 cut(s)	587, 1016
SsiI	CCGC	4 cut(s)	182, 1647, 1898, 2479
SspI	AATATT	1 cut(s)	32
SstI	GAGCTC	2 cut(s)	1077, 2079
StyD4I	CCNGG	7 cut(s)	211, 280, 545, 841, 1058, 1425, 2155
StyI	CCWWGG	2 cut(s)	1858, 2601
TaaI	ACNGT	7 cut(s)	734, 1457, 1671, 1800, 2045, 2148, 2265
TaiI	ACGT	3 cut(s)	589, 1018, 2326
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	2482
TfiI	GAWTC	7 cut(s)	352, 538, 706, 783, 1229, 1766, 1844
TscAI	CASTG	6 cut(s)	15, 1210, 1462, 1674, 2187, 2268
TseFI	GTSAC	3 cut(s)	6, 1457, 1665
TseI	GCWGC	8 cut(s)	335, 838, 1297, 2099, 2258, 2294, 2297, 2583
Tsp45I	GTSAC	3 cut(s)	6, 1457, 1665
TspGWI	ACGGA	1 cut(s)	2123
TspRI	CASTG	6 cut(s)	15, 1210, 1462, 1674, 2187, 2268
Van91I	CCANNNNNTGG	2 cut(s)	2123, 2602
Vha464I	CTTAAG	1 cut(s)	667
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	3 cut(s)	73, 845, 1423
VspI	ATTAAT	2 cut(s)	392, 1941
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	614, 677
XbaI	TCTAGA	1 cut(s)	1570
XceI	RCATGY	3 cut(s)	688, 1096, 2070
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2215
XhoI	CTCGAG	2 cut(s)	689, 701
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	1219, 1995
Zsp2I	ATGCAT	3 cut(s)	370, 383, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.