Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8155852.1

Orthogroup ID

OG0004602

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 656

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8155852.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ggcccttcgagcaaaagagaagttgatggaagatttacgtagacagaagtctcaaacagatgcagaatttagtgcactaatggctagactggattccacagaaaaagaaaatgccttcttaagatatgaatttcacatgctcgagaaggaactcgagattcgtagcgaggagatggagtacaaccgtcggtctgctgaagaatcgcacaaacagcacttggagagtatgatgagaatcacagagttagaacaagaatgtcaaagacttcatcttcttctgcgaaaacggctgccaggtcctgtttcgatgactatgaagaatgaagctaaaatgatggggagggatcagacagagatgagaagaaggaagcttaatcctagtagagatatgatcgtaagagatgccaacatgggaaactctcctgaaataccaaataagaatatgagtttcatgattgagcagttacgtaatatggaagaagaaaacaaagttcttagagatattttaaccaggaaaaactctgagctcctttcttcaaggaacatgcattctcaaatagcttccagattgtctcaagctgagaaatctatggagctggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

FPP

Protein Analysis

200

Amino Acids

23.79

Weight (kDa)

8.69

Isoelectric Point (pI)

80.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19370 AT3G19370 AT3G19370
fragaria_vesca	FvH4_2g05731 FvH4_2g05731 FvH4_2g05731 FvH4_2g05731
malus_domestica	MD05G1084800.v1.1
prunus_persica	Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1
pyrus_communis	pycom05g08380
rosa_chinensis	RchiOBHm_Chr6g0256631
rosa_laevigata	RLG00000014748
rosa_multiflora	Rmu_co8155852.1_g000001 Rmu_sc0007004.1_g000002 Rmu_sc0034019.1_g000001 Rmu_sc0034020.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042850 Rroxscaffold_7G00209150
rosa_rugosa	Rorug05G0565100 Rorug05G0565200 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh6AG083000 Rh6BG077600 Rh6CG072200 Rh6DG069400
rosa_wichuraiana	Rw6G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	66, 129
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	180
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	293, 510
AluBI	AGCT	6 cut(s)	327, 371, 527, 561, 579, 596
AluI	AGCT	6 cut(s)	327, 371, 527, 561, 579, 596
Alw21I	GWGCWC	2 cut(s)	77, 529
Alw26I	GTCTC	2 cut(s)	55, 577
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	300
Ama87I	CYCGRG	2 cut(s)	141, 153
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	66, 129
AspS9I	GGNCC	2 cut(s)	2, 297
AvaI	CYCGRG	2 cut(s)	141, 153
AvaII	GGWCC	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	2 cut(s)	77, 529
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	20, 167, 329
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	2 cut(s)	295, 512
BcoDI	GTCTC	2 cut(s)	55, 577
BfaI	CTAG	2 cut(s)	85, 379
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	295, 512
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	2 cut(s)	141, 153
BmgT120I	GGNCC	2 cut(s)	2, 297
BmrFI	CCNGG	2 cut(s)	295, 512
BmsI	GCATC	2 cut(s)	50, 392
BoxI	GACNNNNGTC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	559
BsaAI	YACGTR	2 cut(s)	39, 468
BsaBI	GATNNNNATC	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	295, 512
BseJI	GATNNNNATC	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	514, 571
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	3
BsiHKAI	GWGCWC	2 cut(s)	77, 529
BsiHKCI	CYCGRG	2 cut(s)	141, 153
BsmAI	GTCTC	2 cut(s)	55, 577
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	3
BsoBI	CYCGRG	2 cut(s)	141, 153
Bsp1286I	GDGCHC	2 cut(s)	77, 529
Bsp143I	GATC	2 cut(s)	344, 391
BspANI	GGCC	1 cut(s)	3
BspCNI	CTCAG	2 cut(s)	515, 572
BspHI	TCATGA	1 cut(s)	451
BspPI	GGATC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	344, 391
Bst2UI	CCWGG	2 cut(s)	295, 512
Bst4CI	ACNGT	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	119
BstBAI	YACGTR	2 cut(s)	39, 468
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	3 cut(s)	495, 523, 580
BstKTI	GATC	2 cut(s)	347, 394
BstMAI	GTCTC	2 cut(s)	55, 577
BstMBI	GATC	2 cut(s)	344, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	9, 81, 212, 287
BstNI	CCWGG	2 cut(s)	295, 512
BstNSI	RCATGY	2 cut(s)	140, 548
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	293, 510
BstSLI	GKGCMC	1 cut(s)	77
BstSNI	TACGTA	2 cut(s)	39, 468
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	3
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	300
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	2, 297
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	4 cut(s)	137, 410, 452, 545
CviJI	RGCY	9 cut(s)	3, 84, 290, 327, 371, 527, 561, 579, 596
CviKI_1	RGCY	9 cut(s)	3, 84, 290, 327, 371, 527, 561, 579, 596
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	495, 523, 580
DpnI	GATC	2 cut(s)	346, 393
DpnII	GATC	2 cut(s)	344, 391
Ecl136II	GAGCTC	1 cut(s)	527
Eco105I	TACGTA	2 cut(s)	39, 468
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	2 cut(s)	141, 153
EcoICRI	GAGCTC	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	293, 510
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	529
FaeI	CATG	4 cut(s)	140, 413, 455, 548
FatI	CATG	4 cut(s)	136, 409, 451, 544
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	2 cut(s)	85, 379
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	3
Hin1II	CATG	4 cut(s)	140, 413, 455, 548
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	4 cut(s)	93, 158, 201, 235
Hpy166II	GTNNAC	2 cut(s)	42, 75
Hpy188I	TCNGA	2 cut(s)	349, 524
Hpy188III	TCNNGA	5 cut(s)	143, 155, 423, 452, 565
Hpy8I	GTNNAC	2 cut(s)	42, 75
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	15, 125, 140, 358
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	38, 467
HpyCH4V	TGCA	3 cut(s)	63, 75, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	9, 81, 212, 287
HpyF3I	CTNAG	3 cut(s)	495, 523, 580
HpySE526I	ACGT	2 cut(s)	38, 467
Hsp92II	CATG	4 cut(s)	140, 413, 455, 548
Kzo9I	GATC	2 cut(s)	344, 391
LmnI	GCTCC	2 cut(s)	532, 593
LpnPI	CCDG	9 cut(s)	75, 280, 307, 313, 436, 497, 524, 578, 582
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	50, 392
MaeI	CTAG	2 cut(s)	85, 379
MaeII	ACGT	2 cut(s)	38, 467
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	346, 393
MboI	GATC	2 cut(s)	344, 391
MboII	GAAGA	9 cut(s)	42, 210, 264, 267, 329, 373, 489, 492, 526
MhlI	GDGCHC	2 cut(s)	77, 529
MluCI	AATT	2 cut(s)	66, 129
MnlI	CCTC	2 cut(s)	161, 334
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	3 cut(s)	120, 373, 507
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	295, 512
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	2 cut(s)	295, 512
MwoI	GCNNNNNNNGC	4 cut(s)	9, 81, 212, 287
NdeII	GATC	2 cut(s)	344, 391
NlaIII	CATG	4 cut(s)	140, 413, 455, 548
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	2 cut(s)	140, 548
PaeR7I	CTCGAG	2 cut(s)	141, 153
PagI	TCATGA	1 cut(s)	451
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	93, 158, 201, 235
PkrI	GCNGC	1 cut(s)	292
Ppu21I	YACGTR	2 cut(s)	39, 468
PpuMI	RGGWCCY	1 cut(s)	297
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	293, 510
PspGI	CCWGG	2 cut(s)	293, 510
PspPI	GGNCC	2 cut(s)	2, 297
PspPPI	RGGWCCY	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	120, 373, 507
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	344, 391
Sau96I	GGNCC	2 cut(s)	2, 297
ScrFI	CCNGG	2 cut(s)	295, 512
SduI	GDGCHC	2 cut(s)	77, 529
SetI	ASST	9 cut(s)	41, 299, 329, 373, 470, 529, 563, 581, 598
SfaNI	GCATC	2 cut(s)	50, 392
Sfr274I	CTCGAG	2 cut(s)	141, 153
SinI	GGWCC	1 cut(s)	297
SlaI	CTCGAG	2 cut(s)	141, 153
SmlI	CTYRAG	4 cut(s)	119, 141, 153, 574
SmoI	CTYRAG	4 cut(s)	119, 141, 153, 574
SnaBI	TACGTA	2 cut(s)	39, 468
Sse9I	AATT	2 cut(s)	66, 129
SspMI	CTAG	2 cut(s)	85, 379
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	293, 510
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	41, 470
TaqI	TCGA	4 cut(s)	8, 142, 154, 306
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	66, 129
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	93, 158, 201, 235
Tru1I	TTAA	3 cut(s)	120, 373, 507
Tru9I	TTAA	3 cut(s)	120, 373, 507
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	142, 258, 330, 337, 440
Vha464I	CTTAAG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	2 cut(s)	66, 129
XceI	RCATGY	2 cut(s)	140, 548
XhoI	CTCGAG	2 cut(s)	141, 153
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	2 cut(s)	85, 379
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.