Rmu_sc0034019.1_g000001

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034019.1
OG0004602
Physical Location & Seq
Forward (+)
1 .. 709
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034019.1_g000001.1.cds

Sequence Viewer

Length: 709 bp
aaatgcccataatcttcgttttaatggtaaggacctgggacgagttgaagttcaatctagcgtcagtgacataagaaagtatggcgagtccagagatgtagtacctgagagttcttttgactggcttcaggttgttttaaaagcaatgttggaccaaaagaatgtttcaaaacgaagtctagatgagctatttgaggacatcaaaattgctttgggttacctaaaacagccaaccaagcatgaggctagtaaaactgcagaatatcaagaggagtcactgtgtcttgctctaattgcttcctcaaatgaaaacaaggttggtgataaattgcaagaagaaaacagcagattaaaaaatgaactgaagaatatggaatctgcaaagaaagaaatggaggctaggctacagtcagaaactgaaaagaatgtagcgttgatggtacaacttcaggaagcacagcaaagccttggaaccttacaaacagatctggagagtctgagagaagcggagaggatgatagaagaccagctcgaaaatcagaagtcgattaatgaagatctcgatacccagctgactattgccaaagcaaagttaaatgaagtcttccagaagttctcgtctttagaagtggaattggaggataaacataactgctttgaagaattagaagcaacatgtcttgagctccaactccagcaagaaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
FPP

Protein Analysis

235

Amino Acids

26.98

Weight (kDa)

4.77

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 507
AcuI CTGAAG 3 cut(s) 111, 384, 432
AfaI GTAC 2 cut(s) 103, 442
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 48, 54, 169, 660
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 4 cut(s) 188, 530, 572, 686
AluI AGCT 4 cut(s) 188, 530, 572, 686
Alw21I GWGCWC 1 cut(s) 688
AlwNI CAGNNNCTG 1 cut(s) 417
AseI ATTAAT 1 cut(s) 550
AspS9I GGNCC 2 cut(s) 32, 152
AsuHPI GGTGA 1 cut(s) 333
AvaII GGWCC 2 cut(s) 32, 152
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 529, 596
Bbv12I GWGCWC 1 cut(s) 688
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 4 cut(s) 58, 180, 247, 400
BfmI CTRYAG 2 cut(s) 256, 405
BglII AGATCT 2 cut(s) 485, 557
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 2 cut(s) 32, 152
BmgT120I GGNCC 2 cut(s) 32, 152
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 529, 596
BpmI CTGGAG 2 cut(s) 510, 678
BpuEI CTTGAG 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 35, 467
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 35, 467
BseGI GGATG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 97, 489
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 688
BslFI GGGAC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 485, 557
BspACI CCGC 1 cut(s) 507
BspCNI CTCAG 2 cut(s) 98, 490
BspLI GGNNCC 1 cut(s) 473
BspMAI CTGCAG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 35, 467
BssMI GATC 2 cut(s) 485, 557
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 280, 409
BstDEI CTNAG 2 cut(s) 106, 498
BstEII GGTNACC 1 cut(s) 216
BstF5I GGATG 1 cut(s) 520
BstKTI GATC 2 cut(s) 488, 560
BstMBI GATC 2 cut(s) 485, 557
BstMWI GCNNNNNNNGC 2 cut(s) 236, 294
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 679
BstPI GGTNACC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 2 cut(s) 256, 405
BstV2I GAAGAC 2 cut(s) 529, 596
BstX2I RGATCY 2 cut(s) 485, 557
BstYI RGATCY 2 cut(s) 485, 557
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 71, 276
CaiI CAGNNNCTG 1 cut(s) 417
Cfr13I GGNCC 2 cut(s) 32, 152
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 102, 441
CviAII CATG 2 cut(s) 240, 676
CviQI GTAC 2 cut(s) 102, 441
DdeI CTNAG 2 cut(s) 106, 498
DpnI GATC 2 cut(s) 487, 559
DpnII GATC 2 cut(s) 485, 557
DraI TTTAAA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 686
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 688
Eco47I GGWCC 2 cut(s) 32, 152
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 3 cut(s) 111, 384, 432
Eco91I GGTNACC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 2 cut(s) 243, 679
FaiI YATR 7 cut(s) 10, 72, 82, 241, 372, 649, 677
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 239, 675
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 1 cut(s) 688
FspBI CTAG 4 cut(s) 58, 180, 247, 400
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 2 cut(s) 510, 678
HgaI GACGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 243, 679
HinfI GANTC 4 cut(s) 87, 273, 375, 494
HphI GGTGA 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 413, 499, 541
Hpy188III TCNNGA 8 cut(s) 91, 180, 267, 450, 489, 561, 608, 681
HpyCH4III ACNGT 2 cut(s) 280, 409
HpyCH4V TGCA 3 cut(s) 258, 332, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 294
HpyF3I CTNAG 2 cut(s) 106, 498
Hsp92II CATG 2 cut(s) 243, 679
Kzo9I GATC 2 cut(s) 485, 557
LmnI GCTCC 1 cut(s) 691
MaeI CTAG 4 cut(s) 58, 180, 247, 400
MaeIII GTNAC 3 cut(s) 66, 216, 274
MalI GATC 2 cut(s) 487, 559
MboI GATC 2 cut(s) 485, 557
MboII GAAGA 7 cut(s) 6, 348, 377, 534, 567, 596, 672
MflI RGATCY 2 cut(s) 485, 557
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 5 cut(s) 205, 292, 327, 633, 663
MlyI GAGTC 3 cut(s) 96, 282, 503
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 7 cut(s) 188, 236, 263, 311, 389, 505, 632
MseI TTAA 5 cut(s) 22, 138, 351, 550, 594
MspA1I CMGCKG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 236, 294
NdeII GATC 2 cut(s) 485, 557
NlaIII CATG 2 cut(s) 243, 679
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 66, 274
NspI RCATGY 1 cut(s) 679
PciI ACATGT 1 cut(s) 675
PfeI GAWTC 1 cut(s) 375
PleI GAGTC 3 cut(s) 95, 281, 502
PpsI GAGTC 3 cut(s) 95, 281, 502
PpuMI RGGWCCY 1 cut(s) 32
PscI ACATGT 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 473
PspPI GGNCC 2 cut(s) 32, 152
PspPPI RGGWCCY 1 cut(s) 32
PstI CTGCAG 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 417
PsuI RGATCY 2 cut(s) 485, 557
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 103, 442
RsaNI GTAC 2 cut(s) 102, 441
SacI GAGCTC 1 cut(s) 688
SaqAI TTAA 5 cut(s) 22, 138, 351, 550, 594
Sau3AI GATC 2 cut(s) 485, 557
Sau96I GGNCC 2 cut(s) 32, 152
SchI GAGTC 3 cut(s) 96, 282, 503
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 688
SfcI CTRYAG 2 cut(s) 256, 405
SinI GGWCC 2 cut(s) 32, 152
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
Sse9I AATT 5 cut(s) 205, 292, 327, 633, 663
SsiI CCGC 1 cut(s) 507
SspMI CTAG 4 cut(s) 58, 180, 247, 400
SstI GAGCTC 1 cut(s) 688
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 2 cut(s) 280, 409
TaqI TCGA 3 cut(s) 532, 546, 562
TasI AATT 5 cut(s) 205, 292, 327, 633, 663
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 5 cut(s) 22, 138, 351, 550, 594
Tru9I TTAA 5 cut(s) 22, 138, 351, 550, 594
TscAI CASTG 2 cut(s) 71, 283
TseFI GTSAC 2 cut(s) 66, 274
Tsp45I GTSAC 2 cut(s) 66, 274
TspDTI ATGAA 4 cut(s) 322, 373, 568, 613
TspRI CASTG 2 cut(s) 71, 283
VpaK11BI GGWCC 2 cut(s) 32, 152
VspI ATTAAT 1 cut(s) 550
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 1 cut(s) 679
XspI CTAG 4 cut(s) 58, 180, 247, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.